Pairwise Alignments

Query, 273 a.a., tRNA pseudouridine(38-40) synthase TruA from Serratia liquefaciens MT49

Subject, 269 a.a., tRNA pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  154 bits (389), Expect = 2e-42
 Identities = 95/242 (39%), Positives = 133/242 (54%), Gaps = 5/242 (2%)

Query: 18  IEYDGSRYYGWQRQQEVASVQACLEQALSKVANAPINVLCAGRTDAGVHATGQVVHFETT 77
           + YDG+ Y+GWQ Q   +SVQ CL +ALS      + V+ AGRTDAGVHA+  V HF+  
Sbjct: 8   LAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLMVAHFDHE 67

Query: 78  AQRKDAAWTMGVNTHLPPDIAVRWVTGVPEDFHARFSATARRYRYIIYNHRYRPAVLQQG 137
                      +N  LPPDI+V  V  V  D HARF ATAR Y+Y +   +Y     +Q 
Sbjct: 68  DVLDTVTVADKLNRLLPPDISVYRVRQVKPDAHARFDATARTYKYYVTTAKY--PFNRQY 125

Query: 138 MTHFYHPLDADRMERAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTR-HGEYI--VV 194
               Y  LD +RM  AA+ L    DFTSF  +    +T   ++ H + T+  GE    V 
Sbjct: 126 RYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKMEGEDTTWVF 185

Query: 195 DIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATARAEGLYLVSVDY 254
            I+A+ F+ +MVR IVG+L+E+G G        +++  +DR  A  +A    L+LV+V+Y
Sbjct: 186 TIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGNALFLVNVEY 245

Query: 255 PE 256
           PE
Sbjct: 246 PE 247