Pairwise Alignments

Query, 234 a.a., ABC transporter permease from Serratia liquefaciens MT49

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  156 bits (395), Expect = 3e-43
 Identities = 96/208 (46%), Positives = 129/208 (62%), Gaps = 2/208 (0%)

Query: 22  GVAVTLWLLISSVVMGGLLAIPMAVARVSSISWVRFPVWLYTYIFRGTPLYVQLLVFYSG 81
           G  +TL L+  SV+ G ++A+P+ +AR S    VR   + Y + FRGTPL VQL + Y G
Sbjct: 16  GAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRGTPLLVQLFLVYYG 75

Query: 82  MYSLEIVRGTDFLNAFFRSGLNCTILALTLNTCAYTTEIFAGAIRAVPHGEIEAANAYGF 141
           M   ++VR +  L  + R    C I+ +TL+T AY  EI  GAI+ VPHGEIEAA A G 
Sbjct: 76  MAQFDVVRQSA-LWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQNVPHGEIEAARALGM 134

Query: 142 SRFKMYRCIILPSALRTALPAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFY 201
           SR +    IILP A R  LPAYSNEVILML ++ALA T T+ +L  +AR I A TY    
Sbjct: 135 SRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMARKIAARTYLHEE 194

Query: 202 AFGIAAVLYLIISYGLISLFRKAEKRWM 229
            F  A ++YL+I++ L+  F+  E RW+
Sbjct: 195 MFLTAGLIYLLIAFILMQGFKLLE-RWL 221