Pairwise Alignments

Query, 450 a.a., NADH-quinone oxidoreductase subunit NuoF from Serratia liquefaciens MT49

Subject, 635 a.a., NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  334 bits (856), Expect = 6e-96
 Identities = 164/396 (41%), Positives = 245/396 (61%), Gaps = 4/396 (1%)

Query: 27  LDEYRSKNGYAGAEKAIKGLAPDEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 86
           ++EY ++ GY      +    P ++++++K +GL+GRGG GF TGLKW    K  S N++
Sbjct: 169 IEEYIAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQVS-NVK 227

Query: 87  YLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 146
           Y++CNADE +PG + DR +ME  PH +VE M I  +++ + +G +++R EY  A   L++
Sbjct: 228 YVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAINRLKK 287

Query: 147 AIAEATEAGYLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 206
           AI +A E G LG +I+G+ F F++ +  GAG ++CGEETALI+S+EG+R  P  KPPFPA
Sbjct: 288 AIEQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPA 347

Query: 207 SSGVWGKPTCVNNVETLCNVPAILANGIDWYKGISAGKSNDAGTKLMGFSGRVKNPGVWE 266
            SG  GKPT VNNVETL N+P IL  G +W+  I  G     GTK+   +G++ N G+ E
Sbjct: 348 ESGYLGKPTNVNNVETLANIPIILTKGAEWFASI--GTERSKGTKVFALAGKINNVGLIE 405

Query: 267 LPFGTTAREILEDYAGGMRDGLRFKAWQPGGAGTDFLTADHLDLPMDFENIGKAGSRLGT 326
           +P GTT RE++ +  GG++ G +FKA Q GG     LT  HLD P+DF+N+  AGS +G+
Sbjct: 406 VPMGTTLREVIYEIGGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPIDFDNLLAAGSMMGS 465

Query: 327 ALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGQGQPGDIET 386
              + +D +  MV + R   +F   ESCG CTPCR G    +++L  +  G+G   D++T
Sbjct: 466 GGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTEKDLDT 525

Query: 387 LEQLCRSLGPGKTFCAHAPGAVEPLQSAIKYFREEF 422
           L  L R +      C     +  P+ S +  FR+E+
Sbjct: 526 LATLGRVI-KDTALCGLGQTSPNPVLSTLDNFRDEY 560