Pairwise Alignments

Query, 216 a.a., transcriptional regulator RcsB from Serratia liquefaciens MT49

Subject, 212 a.a., capsular synthesis regulator component B, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (376), Expect = 4e-41
 Identities = 82/201 (40%), Positives = 127/201 (63%), Gaps = 2/201 (0%)

Query: 6   VIIADDHPIVLFGIRKSLEQIE-WVNVVGEFEDSTALINNLSKLDANVLITDLSMPGDKY 64
           +I+ADDHPI+L G+R  + +++   ++V E  + + L   L + + ++LITD SMP D  
Sbjct: 5   IILADDHPIILTGVRSLMAEMQPSCDIVAEANNVSELWRTLEQHECDLLITDFSMPNDDN 64

Query: 65  GDGITLIKYIKRHYPQLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQ 124
            DG+ +IK ++R YP L IIVLT  +N  +L A+L + I+G++LK+    +L K +  + 
Sbjct: 65  VDGMAMIKQLRRKYPNLPIIVLTQVHNLGVLQALLQIGIQGLLLKKSVIAELEKTVKKVL 124

Query: 125 KGKKFTPESVSKLLERISASGYG-DKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTIS 183
            G  +  E+V +LL     + Y     LS KE EV+RL A G  VT++A  LNRS+KTIS
Sbjct: 125 LGSVYIGETVHELLNEQGINQYAIPVELSLKEIEVVRLLANGMSVTQVASYLNRSVKTIS 184

Query: 184 SQKKSAMMKLGVENDIALLNY 204
           +QK +AM KLG+++D  L +Y
Sbjct: 185 TQKTNAMQKLGLKSDSELFHY 205