Pairwise Alignments

Query, 585 a.a., DEAD/DEAH box helicase family protein from Serratia liquefaciens MT49

Subject, 588 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella amazonensis SB2B

 Score =  595 bits (1533), Expect = e-174
 Identities = 317/580 (54%), Positives = 394/580 (67%), Gaps = 10/580 (1%)

Query: 1   MAFTLRPYQLEAVEATIKHFRQHPQPALIVLPTGAGKSLVIAELAKRARGRVLVLAHVKE 60
           M   LR YQ +A+EAT+ HFR   + AL+VLPTGAGKSLVIAELA+ A+GRVLVL HVKE
Sbjct: 11  MTIKLRDYQQDAIEATLAHFRTSRESALLVLPTGAGKSLVIAELARLAKGRVLVLTHVKE 70

Query: 61  LVAQNHAKYRAYGLEADIFAAGLQQKDSAGKVVFGSVQSVARNLSLFDGAFSLLIIDECH 120
           LVAQN  K  A    A IF+AGL +KDS GK V   +QS A N++ FD  FSL+IIDECH
Sbjct: 71  LVAQNAQKVDALAGNASIFSAGLGEKDSGGKTVVAGIQSAAVNVAAFDEPFSLVIIDECH 130

Query: 121 RISDDDESQYQQIIQHLQKTNPQLRLLGLTATPYRLGKGWIYQYHYHGFTRGDASSLFRD 180
           R+S D+ SQY+Q+   L++ NP L LLGLTATPYRLG+G IY+ H  G        +F  
Sbjct: 131 RVSLDENSQYRQVFSQLREKNPDLLLLGLTATPYRLGEGAIYKRHVRGHVGNPDKGVFDV 190

Query: 181 CIYELPLRYMIKNGYLVPPERLDMPIVQYDFSRLEARSNGLFSEVDLNRELKQQNRITPH 240
           CI+ELP+R +IK GYL  P  LD    QY+F+ L+A  +  + E ++   L    R T  
Sbjct: 191 CIFELPIRSLIKQGYLTEPLLLDGLAAQYNFAALKASEDADYQEAEVQAILDTSTRATTT 250

Query: 241 IISQIVEYAETRKGVMIFASTVEHAREVHGLLPSGEAALVSAETPAAERDALIEAFKQQQ 300
           I+ Q+   A+ R GV+IFA+TV HA+E+  LL    AAL++A+TP  ERD +I AFK Q+
Sbjct: 251 IMGQLKALAQQRLGVIIFAATVRHAKEIMALLDE-SAALITADTPGPERDNIITAFKAQE 309

Query: 301 LRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKEDCLILDYAGNP 360
           L++LVNVAVLTTGFDAPHVDLIAILRPT SVSL+QQ+VGRGLRL PGK +CLILDYA N 
Sbjct: 310 LKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRLFPGKAECLILDYAANG 369

Query: 361 HDLFTPEVGVSKPHSDSQPVQVFCPGCGFANLFWGKCTENGDIIEHYGRRCQGWLEDDEG 420
             L+ P+VG  +P S S PVQV CP CGFANLFWGK   +GDIIEHYGRRCQG L+D   
Sbjct: 370 FSLYHPDVGKPRPDSKSVPVQVPCPACGFANLFWGKADTDGDIIEHYGRRCQGLLDDG-- 427

Query: 421 HREQCDYRFRFKSCPHCGAENDIAARRCHQCQEVLVDPDDMLKAALKLKDALVLRCGGME 480
              QCD+RFR + CP CGAENDIAAR C  C   LVDPD  LKA L  K   + +   M 
Sbjct: 428 --NQCDFRFRARICPDCGAENDIAARVCRGCDSALVDPDKHLKAVLAHKHHHLFKVTDML 485

Query: 481 LQSGRDEKGEWLKATYYDEDGTSTSERFRLQTPAQRKAFDMLFLRPHQRAPGVPF-AWQN 539
           L  G  + G  L+ TY D DG S  ERF++QTP QRKA   LFL  HQRAPG+    + +
Sbjct: 486 L--GATDAG--LEVTYLDMDGNSFIERFKMQTPGQRKALYALFLLRHQRAPGLALPKYPD 541

Query: 540 AADVLAKQALLRHPDFVVARKRGQFWQVREKVFDYQGRFR 579
           A  ++   A  R P+ ++ +K    WQ+ +K FDY+G+++
Sbjct: 542 AKALIKDSAKFRAPELLLLKKSKFGWQLVDKFFDYRGKYQ 581