Pairwise Alignments

Query, 585 a.a., DEAD/DEAH box helicase family protein from Serratia liquefaciens MT49

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score =  605 bits (1560), Expect = e-177
 Identities = 309/575 (53%), Positives = 394/575 (68%), Gaps = 6/575 (1%)

Query: 5   LRPYQLEAVEATIKHFRQHPQPALIVLPTGAGKSLVIAELAKRARGRVLVLAHVKELVAQ 64
           LR YQ +AV+A I HF++    AL+VLPTGAGKS+VIAELA+ A+GR LVL HVKELVAQ
Sbjct: 3   LRDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSIVIAELARIAKGRTLVLTHVKELVAQ 62

Query: 65  NHAKYRAYGLEADIFAAGLQQKDSAGKVVFGSVQSVARNLSLFDGAFSLLIIDECHRISD 124
           N  K      EA IF+AGL+QK +  K V  S+QS  RN   FD  +SL+IIDECHR+S+
Sbjct: 63  NAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNPKQFDEPYSLVIIDECHRVSN 122

Query: 125 DDESQYQQIIQHLQKTNPQLRLLGLTATPYRLGKGWIYQYHYHGFTRGDASSLFRDCIYE 184
           + ESQYQQ++ HL+  N +LRLLGLTATPYRLG GWIY+YHYHG        +F  CI+E
Sbjct: 123 EKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCIFE 182

Query: 185 LPLRYMIKNGYLVPPERLDMPIVQYDFSRLEARSNGLFSEVDLNRELKQQNRITPHIISQ 244
           LP+R +IK G+L PP+ LD    QYDFS L   +NG ++E +++  L    R T  I+ Q
Sbjct: 183 LPMRPLIKQGFLTPPKVLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIVEQ 242

Query: 245 IVEYAETRKGVMIFASTVEHAREVHGLLPSGEAALVSAETPAAERDALIEAFKQQQLRYL 304
           I +   TR G +IFA+TV HA+E+  LL S EA L++A+TP+ ERDA+I+AFK+++L YL
Sbjct: 243 IKQLTNTRAGTIIFAATVRHAKEIMTLLDSPEAGLITADTPSQERDAIIDAFKRRELSYL 302

Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKEDCLILDYAGNPHDLF 364
           VNVAVLTTGFDAPHVDLIAILRPT SVSL+QQ+VGRGLR+  GK DCL++DYA N  DLF
Sbjct: 303 VNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKRDCLVIDYAANGFDLF 362

Query: 365 TPEVGVSKPHSDSQPVQVFCPGCGFANLFWGKCTENGDIIEHYGRRCQGWLEDDEGHREQ 424
            PEVG  KP S S PVQV CP CGFAN+FWG    +GDIIEH+GRRCQ  ++D +G + Q
Sbjct: 363 FPEVGRPKPDSKSVPVQVPCPECGFANVFWGLVDGDGDIIEHFGRRCQAVVDDGDG-KHQ 421

Query: 425 CDYRFRFKSCPHCGAENDIAARRCHQCQEVLVDPDDMLKAALKLKDALVLRCGGMELQSG 484
           CD+RFR K+CP+CG ENDIAA+ C  CQ  L+DPD  LK  L+ K   + RC  M  ++ 
Sbjct: 422 CDFRFRAKACPNCGEENDIAAKVCQHCQSTLIDPDKRLKEVLQQKHHHLFRCQEMLFEAD 481

Query: 485 RDEKGEWLKATYYDEDGTSTSERFRLQTPAQRKAFDMLFLRPHQRAPGVPFAWQNAAD-V 543
            D     L+  Y D +G      F   T AQ +AF  +F+  H R PG      +  D V
Sbjct: 482 NDR----LRVRYLDIEGNDFCCYFNFATKAQIRAFYGVFVHQHTRTPGQKQPTFSKVDQV 537

Query: 544 LAKQALLRHPDFVVARKRGQFWQVREKVFDYQGRF 578
           +A +   R PD ++ +K  + W++ E  FDY+GRF
Sbjct: 538 IAARDYFRMPDLLLLKKGKRGWELVESFFDYRGRF 572