Pairwise Alignments
Query, 503 a.a., sugar ABC transporter ATP-binding protein from Serratia liquefaciens MT49
Subject, 509 a.a., D-ribose transporter ATP binding protein from Burkholderia phytofirmans PsJN
Score = 330 bits (847), Expect = 6e-95
Identities = 188/498 (37%), Positives = 288/498 (57%), Gaps = 12/498 (2%)
Query: 2 PTPTPSRLEMRNISIAFAGFNALQNVDFTLQGGSTHALVGANGAGKSTLMAILSGAHDHY 61
PT RLE+R+ S +F AL + D L G HAL+G NGAGKST++ IL+G H
Sbjct: 4 PTSAVPRLELRHASKSFGRVRALSDGDLALWPGEVHALLGENGAGKSTVVKILAGVHQPD 63
Query: 62 RGEIFIDGQQVDIHSPLQARQYGIHVVQQEVDVALIPTLSVAENIMLDWLNEPGHLLNWA 121
GE+ +DG+ +P +AR G+ V+ QE L LS+AENI + +P +
Sbjct: 64 TGELVVDGEARRFATPAEARDAGLAVIYQEP--TLFFDLSIAENIFMG--RQPVDRIGRI 119
Query: 122 Q---LYRQAAQLLTQLDLTINLRQRLSECTLAEKQQVLLARALSHRCRFLVLDEPTAPLD 178
Q + R+ LL L + + Q + ++A++Q + +A+ALS L++DEPTA L
Sbjct: 120 QYDAMRREVDGLLASLGVDLRADQLVRGLSIADQQVIEIAKALSLNANVLIMDEPTAALS 179
Query: 179 RAESERLFRVVRRLQSEGIGVVFISHRIHELSEICDRLTVLRDGRHVSEDAMQGLTGEQI 238
E ERLF +VR+L+ + ++FI+HR+ E+ + R+T++RDG V + L E I
Sbjct: 180 LPEVERLFTIVRKLRERDVAILFITHRLDEVFALTQRVTIMRDGAKVFDGLTTDLNTEAI 239
Query: 239 VEKMLGHRLDDIFPPPRPPHGSRPLLRVEGLHDRHKLRDVSLQLHQGEILGIAGLAGAGK 298
V KM+G L+ +P P G L V GL +D+S + GEI+ +AGL GAG+
Sbjct: 240 VAKMVGRDLETFYPKAERPPGE-VRLSVRGLTRVGVFKDISFDVRAGEIVALAGLVGAGR 298
Query: 299 TELCKALFGASPARIERGEL--LGKPWAPRAPHLSVEQGLALVPEERRKEGIFIDEAIPM 356
+E+ +A+FG P ++ GE+ GK P +V GLALVPE+RR++G+ ++ +I
Sbjct: 299 SEVARAIFGIDP--LDSGEIWIAGKRLTAGRPAAAVRAGLALVPEDRRQQGLALELSIAR 356
Query: 357 NLSVSADDSFSRWSLFSRRQELRWARDIMQRLNIRASGPQQKLARLSGGNQQKVAIGKWL 416
N S++ + L S R E + A RL ++A P + LSGGNQQKV +GKWL
Sbjct: 357 NASMTVLGRLVKHGLISARSETQLANQWGTRLRLKAGDPNAPVGTLSGGNQQKVVLGKWL 416
Query: 417 RGDPSVLIFDEPTKGVDIKAKQELFTLIDGLARNGKGIIYASGEFSELVGLCDRICVLWD 476
P VLI DEPT+G+D+ AK E+++ + L R+G ++ S E E++G+ DR+ V+ +
Sbjct: 417 ATGPKVLIIDEPTRGIDVGAKAEVYSALAELVRDGMAVLMISSELPEVLGMADRVLVMHE 476
Query: 477 GRVVAELNAADIDEETLL 494
GR+ A++ AD DEE ++
Sbjct: 477 GRISADIARADADEERIM 494
Score = 73.9 bits (180), Expect = 1e-17
Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 22/263 (8%)
Query: 4 PTPSRLEMRNISIAFAGFNALQNVDFTLQGGSTHALVGANGAGKSTLMAILSGAHDHYRG 63
P RL +R ++ +++ F ++ G AL G GAG+S + + G G
Sbjct: 259 PGEVRLSVRGLTRV----GVFKDISFDVRAGEIVALAGLVGAGRSEVARAIFGIDPLDSG 314
Query: 64 EIFIDGQQVDIHSPLQARQYGIHVVQQEV-DVALIPTLSVAENIMLDWLNEPGHLLNWAQ 122
EI+I G+++ P A + G+ +V ++ L LS+A N + L G L+
Sbjct: 315 EIWIAGKRLTAGRPAAAVRAGLALVPEDRRQQGLALELSIARNASMTVL---GRLVKHGL 371
Query: 123 LY-RQAAQLLTQLDLTINLRQR-----LSECTLAEKQQVLLARALSHRCRFLVLDEPTAP 176
+ R QL Q + L+ + + +Q+V+L + L+ + L++DEPT
Sbjct: 372 ISARSETQLANQWGTRLRLKAGDPNAPVGTLSGGNQQKVVLGKWLATGPKVLIIDEPTRG 431
Query: 177 LDRAESERLFRVVRRLQSEGIGVVFISHRIHELSEICDRLTVLRDGRHVSEDAMQGLTGE 236
+D ++ + L +G+ V+ IS + E+ + DR+ V+ +GR ++ A E
Sbjct: 432 IDVGAKAEVYSALAELVRDGMAVLMISSELPEVLGMADRVLVMHEGRISADIARADADEE 491
Query: 237 QIVEKMLGHRLDDIFPPPRPPHG 259
+I+ LG P PP G
Sbjct: 492 RIMGAALGQ--------PMPPLG 506
Score = 69.3 bits (168), Expect = 3e-16
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 19/246 (7%)
Query: 258 HGSRPLLRVEGLHDRHKLRDVSLQLHQGEILGIAGLAGAGKTELCKALFGASPARIERGE 317
H S+ RV L D L L GE+ + G GAGK+ + K L G + GE
Sbjct: 15 HASKSFGRVRALSDG------DLALWPGEVHALLGENGAGKSTVVKILAGVHQP--DTGE 66
Query: 318 LLGKPWAPR--APHLSVEQGLALVPEERRKEGIFIDEAIPMNLSVSAD--DSFSRWSLFS 373
L+ A R P + + GLA++ +E +F D +I N+ + D R +
Sbjct: 67 LVVDGEARRFATPAEARDAGLAVIYQEPT---LFFDLSIAENIFMGRQPVDRIGRIQYDA 123
Query: 374 RRQELRWARDIMQRLNIRASGPQQKLARLSGGNQQKVAIGKWLRGDPSVLIFDEPTKGVD 433
R+E+ + +++RA Q + LS +QQ + I K L + +VLI DEPT +
Sbjct: 124 MRREVDGLLASLG-VDLRAD---QLVRGLSIADQQVIEIAKALSLNANVLIMDEPTAALS 179
Query: 434 IKAKQELFTLIDGLARNGKGIIYASGEFSELVGLCDRICVLWDGRVVAELNAADIDEETL 493
+ + LFT++ L I++ + E+ L R+ ++ DG V + D++ E +
Sbjct: 180 LPEVERLFTIVRKLRERDVAILFITHRLDEVFALTQRVTIMRDGAKVFDGLTTDLNTEAI 239
Query: 494 LLYSTG 499
+ G
Sbjct: 240 VAKMVG 245