Pairwise Alignments

Query, 330 a.a., peptide ABC transporter ATP-binding protein SapD from Serratia liquefaciens MT49

Subject, 334 a.a., peptide ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  220 bits (561), Expect = 3e-62
 Identities = 122/309 (39%), Positives = 180/309 (58%), Gaps = 6/309 (1%)

Query: 3   LLDIRNLTIEFMTAEGPVKAVDRVSMTLSEGEVRGLVGESGSGKSLIAKAICGVTKDNWR 62
           LLD++NL ++  T  G + AV  +   +  GE+  LVGESG GKS+ + A+ G+     +
Sbjct: 4   LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63

Query: 63  VTADRFRFDDIDLLQLTPRERRKLVGHNVSMIFQEPQSCLDPSESIGRQLVQAIPGWTYK 122
            +AD   FD +DL  +  ++  +L G  ++MIFQEP + L+PS ++G QL +A+      
Sbjct: 64  CSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123

Query: 123 GRWWQRFNWRKRRAIELLHRVGIKDHKDIMGSFPYELTDGECQKVMIAIALANQPRLLIA 182
            R   R      RA+ LLHR GI + +D +  +P++L+ G  Q+VMIA++L   P L+IA
Sbjct: 124 SRAEAR-----ERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIA 178

Query: 183 DEPTNAMEPTTQAQIFRLLARLNQNNNTTILLISHDLQMMSKWADRVNVLYCGQTVESAQ 242
           DEPT A++ T QAQI R++  L Q     ++ I+HDL ++S+ ADRV V+Y GQ VE+  
Sbjct: 179 DEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTD 238

Query: 243 CEDLLAAPHHPYTQALIRAMPDFGRALPHKSRLNTLPGAIPSLEHLPIGCRLGPRCPYAQ 302
              L A P HPYTQ L+  +P  G+ LP  S L  +PG +PSL     GC    RC  A 
Sbjct: 239 VAQLFAQPRHPYTQGLLNCIPVRGKTLP-GSHLQAIPGVVPSLVGQVSGCAFRNRCAKAD 297

Query: 303 KKCIETPRL 311
             C   P++
Sbjct: 298 SGCERDPQM 306