Pairwise Alignments

Query, 281 a.a., carbohydrate ABC transporter permease from Serratia liquefaciens MT49

Subject, 279 a.a., ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 (from data) from Sinorhizobium meliloti 1021

 Score =  139 bits (351), Expect = 5e-38
 Identities = 83/285 (29%), Positives = 140/285 (49%), Gaps = 13/285 (4%)

Query: 3   LSRQQQKYGHKTLIFAAAALASVICLFPFYYALITSLRSGQDLFQ---VAYLPGNLHWGN 59
           +S+ +  +     + AA    ++I LFP +  ++ S +S   +F+       P       
Sbjct: 1   MSKARASFMRTGAVHAALIAYTLIALFPVFLTIVNSFKSRNAIFREPLAVPTPETFSLIG 60

Query: 60  YLTALMENGIARSLLNSIVVATLTVGICLLVSITAAFALARIRFRGRK----YLLFTILC 115
           Y T L +        NSI+V  +++ + LL    AAFAL+  RFRG      YL   I+ 
Sbjct: 61  YETVLKQGDFIGYFQNSIIVTVVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMI 120

Query: 116 VSMFPQVAVLSGMFELVRFMGLYDSLGALVLSYTTFSLPFTVWVLTTFMKAIPAELEEAA 175
                 VA+L GM       GL ++L AL+L YT   LP  V++L+ FM+ +  +L+ A 
Sbjct: 121 PIRLGTVAILQGMVAT----GLVNTLTALILVYTAQGLPLAVFILSEFMRTVSDDLKNAG 176

Query: 176 IVDGAGTWTIITRIFAPIMGPSLVTTGLLAFIGAWNEFMFALTFVISSGKRTVPVAIGML 235
            +DG   + I  R+  P++ P++ T  +   I  WN+  F L  +++  + T  V +G  
Sbjct: 177 RIDGLSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPL--ILAPAEATKTVTLGSQ 234

Query: 236 QGASQFELPWGTIMAASVIVTLPIIALVLIFQRRIVSGLTNGAVK 280
               QF   W  +++A  +   P++ L +IF R+++ G+T GAVK
Sbjct: 235 IFIGQFVTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK 279