Pairwise Alignments

Query, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

Subject, 371 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  366 bits (939), Expect = e-106
 Identities = 208/372 (55%), Positives = 254/372 (68%), Gaps = 10/372 (2%)

Query: 1   MQRKKVLLVSLSLLLAACDGQSGGAPAGAGSVQEVGVATLQAQPVTLSSDLTGRVNATMT 60
           M  +  + V+ +LLLA C G     P G     EVGV TL+A+PVT++S+LTGR  AT  
Sbjct: 1   MPLRTPIAVTAALLLAGCGGAKQMPPQGPA---EVGVVTLRAEPVTMTSELTGRTTATAI 57

Query: 61  SDVRPQVDGIIKKRLFTEGAEVKAGQVLYQIDPATYQASYDQAAAQLKSAEATVKSSRLK 120
           +++RPQVDGIIK RLFTEG+ V+AGQ LYQIDP  Y AS +QAAAQL SA+A+V ++  K
Sbjct: 58  AEIRPQVDGIIKARLFTEGSYVRAGQPLYQIDPRLYVASRNQAAAQLASAQASVITANAK 117

Query: 121 AQRYAALVKENGVSKQDADDAMATYLEAVAAVAQYQASLESAKINLAYTQVRAPISGRIG 180
             RY  L   + VSKQ+ DDA+AT     A+V QY A+L+SAK+NL +T+V APISGRIG
Sbjct: 118 VARYRQLGGADAVSKQEIDDAVATARAGEASVRQYAATLDSAKVNLGFTRVYAPISGRIG 177

Query: 181 ISSVTPGALVTASQTDALATIRALDPIYVDLTQSSSQLLKLRKQQASLQRDDVTP----V 236
            S+VT GALV   Q  ALATI+ LDPIYVD+ QSS  LL LR+   SL + DV P    V
Sbjct: 178 RSNVTQGALVGTGQATALATIQQLDPIYVDIQQSSDALLALRE---SLAKGDVLPASTTV 234

Query: 237 AIKLEDGTPYTHPGKLELTEVAVDESTGSVTLRAVFPNPEHELLPGMYVHATVDNGVNPK 296
            + L +G  Y   G +E  EV+VD  +G VTLRA FPNP + LLPGM+V       V   
Sbjct: 235 QLVLSNGRVYPQTGTIEFGEVSVDPGSGMVTLRARFPNPNNLLLPGMFVRVKAPQAVVRN 294

Query: 297 GILAPQQGITRNAKGEATALVVNAQNKVEQRTIITEQVIGSNWLVSKGLNAGDRLIVEGT 356
           GILAPQQGITR+AKG ATALVV+   KVEQRT+   Q IG  WLV+ GL AG+RLIVEGT
Sbjct: 295 GILAPQQGITRDAKGNATALVVSRDGKVEQRTVSVAQAIGDKWLVTGGLKAGERLIVEGT 354

Query: 357 NKVAAGIEVKAV 368
           +K   G EVKAV
Sbjct: 355 DKARPGAEVKAV 366