Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 482 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  300 bits (767), Expect = 1e-85
 Identities = 165/340 (48%), Positives = 222/340 (65%), Gaps = 7/340 (2%)

Query: 346 AYQEINRLKESLVHENLYLTEQINGNNPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLIL 405
           A +++  L E L +EN YL  ++  +  +   I G S  + ++++Q+++VA +  +VLI 
Sbjct: 146 ALKQVQALSEKLANENDYLLTELASHRQEVN-ISGESETIQSLIQQIKLVANTSSTVLIN 204

Query: 406 GETGTGKELIARAIHNLSERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGR 465
           GE GTGKEL+AR IH LS+R DQ +V +NCA     LLES+LFGHEKGAFTGAT++R GR
Sbjct: 205 GENGTGKELVARNIHALSDRSDQPLVSVNCAAFSPTLLESELFGHEKGAFTGATSRRKGR 264

Query: 466 FELADKGTLFLDEVGEIPVELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQM 525
           FELA +GTLFLDEV E+ +E Q KLLRV+QE+EFERVG +  I VD+RL+ AT+ DL + 
Sbjct: 265 FELAHQGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGSSTPIKVDIRLVTATHHDLLKR 324

Query: 526 VADREFRSDLFYRLNVFPIVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRL 585
           V    FR DL+YRLNVFP+ +PPLRER +DIP LV  +   +  ++ + I  +  + ++ 
Sbjct: 325 VEQGLFRMDLYYRLNVFPLHVPPLRERLQDIPLLVSDILLNLNHKLGKKIKGVSKQGMQH 384

Query: 586 LSQMPWPGNVRELENVIERAVLLTRGTVLNLQLPELQYPVPSMALPVPKAEPSQPGEDER 645
           L    WPGNVREL+NVIER  +L  G +  LQ+P LQ    +   P  K E     + E 
Sbjct: 385 LMAYHWPGNVRELQNVIERQTILCHGQI--LQIPALQ----AEPQPQDKGEFQTLQQVEA 438

Query: 646 QQIIRVLKETNGVVAGPRGAAQRLGLKRTTLLSRMKKWGI 685
             I R LK  N  ++GP GAA  LGL  +TL SRM K GI
Sbjct: 439 AHIRRTLKRLNWRISGPNGAANLLGLPASTLRSRMLKLGI 478