Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 488 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  303 bits (777), Expect = 1e-86
 Identities = 162/341 (47%), Positives = 226/341 (66%), Gaps = 7/341 (2%)

Query: 346 AYQEINRLKESLVHENLYLTEQINGNNPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLIL 405
           A  ++  L E L  EN YL  ++     D  +I G S V+  +++Q+ MVA +D +VLI 
Sbjct: 146 ALAQVQALSEQLASENHYLQAELADKTGDV-DISGGSAVIRHMIQQLHMVANTDSTVLIC 204

Query: 406 GETGTGKELIARAIHNLSERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGR 465
           GE GTGKEL+AR +H LS R+D+ M+ +NCA   A LLES+LFGHEKGAFTGAT+QR GR
Sbjct: 205 GENGTGKELVARNLHQLSRRKDKPMISVNCAAFSASLLESELFGHEKGAFTGATSQRKGR 264

Query: 466 FELADKGTLFLDEVGEIPVELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQM 525
           FELA +GTLFLDEV E+ +E Q KLLRV+QE+ FER+GG++ I VD+RL+AA++ DL + 
Sbjct: 265 FELAHQGTLFLDEVAELSLEAQSKLLRVIQEQSFERLGGSETIKVDIRLVAASHHDLLKR 324

Query: 526 VADREFRSDLFYRLNVFPIVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRL 585
           V    FR DL+YRLNVFPI +PPLR R  D+P+LV  + + + R++ + I  +  + L+ 
Sbjct: 325 VEQGLFRMDLYYRLNVFPIQVPPLRARLGDMPELVSHILHTLNRKLGKKIRGVSQKGLKK 384

Query: 586 LSQMPWPGNVRELENVIERAVLLTRGTVLNLQ-LPELQYPVPSMALPVPKAEPSQPGEDE 644
           L    WPGNVREL+N++ER  +L++  +L++  +P       + A P+         E E
Sbjct: 385 LMTYSWPGNVRELQNILEREAILSQTDILHIHAMPTHHLQTQTAASPLQTL-----AEAE 439

Query: 645 RQQIIRVLKETNGVVAGPRGAAQRLGLKRTTLLSRMKKWGI 685
            Q I + LK+ N  ++G  GAA  LG+  +TL SRMKK GI
Sbjct: 440 AQHIEQTLKQLNWRISGANGAANVLGVPPSTLRSRMKKLGI 480