Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 477 a.a., flagellar regulatory protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  264 bits (675), Expect = 6e-75
 Identities = 150/348 (43%), Positives = 215/348 (61%), Gaps = 41/348 (11%)

Query: 375 FGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKELIARAIHNLSERRDQRMVKMN 434
           F  +VGRS  ++ V   +  VA SD +VL+LG++GTGKE++AR IH LSERRD   + +N
Sbjct: 131 FRSLVGRSDGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSERRDGPFIPVN 190

Query: 435 CAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTLFLDEVGEIPVELQPKLLRVL 494
           C  +P  LLES+LFGHEKG+FTGA + R GRFELA+ GTLFLDE+G++P+++Q KLLRVL
Sbjct: 191 CGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLQMQVKLLRVL 250

Query: 495 QEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSDLFYRLNVFPIVIPPLRERPE 554
           QER FERVGG K I+ DVR++AAT+RDL+ M++  EFR DL+YRLNVFPI +P L ER +
Sbjct: 251 QERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERKD 310

Query: 555 DIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGNVRELENVIERAVLLTRGTVL 614
           D+P L++ L  ++    +  +       +  L +  W GNVREL N++ER  +L  G ++
Sbjct: 311 DVPLLLQELVSRVYNEGRGKV-RFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLV 369

Query: 615 NLQLPELQY---PVPSMAL--------------------PVPKAEPSQP----------- 640
           ++    ++Y    VP  ++                    PV   E   P           
Sbjct: 370 DVNDLPIKYRHIDVPEYSVELSEEQQERDALASIFTSEEPVEIPETRFPSELPPEGVNLK 429

Query: 641 ---GEDERQQIIRVLKETNGVVAGPRGAAQRLGLKRTTLLSRMKKWGI 685
               E E   I + L++ + VVA    AA+ LG++RTTL+ +M+K+G+
Sbjct: 430 DLLAELEIDMIRQALEQQDNVVA---RAAEMLGIRRTTLVEKMRKYGM 474