Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 551 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  304 bits (778), Expect = 8e-87
 Identities = 183/407 (44%), Positives = 242/407 (59%), Gaps = 23/407 (5%)

Query: 301 PLVFGNKTLGVLKLAQCQPDNFNAANLRVLQQ-----IAERIAIAVDNALAYQEINRLKE 355
           P++   + +G+L L   +P      +L  L        A+ +A A+ NA A++EI  L+ 
Sbjct: 142 PMMCKGELVGLLALFYERPMTDRLGDLLSLHYKMHKIYADSLAAAITNARAFEEILHLRR 201

Query: 356 SLVHENLYLTEQINGNNPDFG-EIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKEL 414
            L  EN  L  Q+   + D    IVG       VL QV+MVA +D +VL+ GE+GTGKEL
Sbjct: 202 ELERENERLRRQVEHGSADGNLPIVGDCPAWLRVLAQVDMVAPTDATVLVQGESGTGKEL 261

Query: 415 IARAIHNLSERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTL 474
           +A AIH  S+R    +V++NC+ +P  L ES+ FGH KGAFTGA   R+GRF++AD GTL
Sbjct: 262 VAEAIHRRSQRSTAPLVRVNCSAIPRELFESEFFGHVKGAFTGAVRDRIGRFQMADGGTL 321

Query: 475 FLDEVGEIPVELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSD 534
           FLDEVGEIP+ELQ KLLRVLQE  FERVG ++  SVDVR+IAATNRDL+Q V    FR D
Sbjct: 322 FLDEVGEIPLELQGKLLRVLQEGTFERVGEDRTRSVDVRIIAATNRDLRQEVDAGRFRQD 381

Query: 535 LFYRLNVFPIVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGN 594
           LF+RL+VFP+ +PPLR+R  DIP L +    + +RR+      +    L  LS  PWPGN
Sbjct: 382 LFFRLSVFPVELPPLRDRQGDIPLLARHFIAQSSRRLGLPTPRLTPAALARLSAYPWPGN 441

Query: 595 VRELENVIERAVLLTRGTVLNLQLPELQYPVP---------SMALPVPKAEPSQPGED-- 643
           VRE++NVIERAV++     L +       P P         S+A P P A      E+  
Sbjct: 442 VREMQNVIERAVIMAEEGALGMD----ALPAPEGLRHDDRVSVAAPAPGATTIVTEEEWR 497

Query: 644 --ERQQIIRVLKETNGVVAGPRGAAQRLGLKRTTLLSRMKKWGILVK 688
             +R  I R L+   G V G  GAA+ LG+  TTL SRM+  G+  K
Sbjct: 498 TMQRDNIRRALQAAEGRVHGVGGAAELLGIPPTTLRSRMQALGLSPK 544