Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  277 bits (708), Expect = 9e-79
 Identities = 161/338 (47%), Positives = 221/338 (65%), Gaps = 13/338 (3%)

Query: 357 LVHENLYLTEQINGNNPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKELIA 416
           LV EN  L ++   N+P    +VG S VM  +   +     S+ +VLI+GE+GTGKELIA
Sbjct: 122 LVVENEELRKRYVENDPT-APLVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELIA 180

Query: 417 RAIHNLSERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTLFL 476
           +A+H+ S R  Q +VK+NCA +P  LLES+LFG+ +GAFTGA   + GRF+LA  GTLFL
Sbjct: 181 QALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFL 240

Query: 477 DEVGEIPVELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSDLF 536
           DE+GE+P+ELQ KLLRVLQER  E +GG + +SVDVR+IAATNRDL++ VA   FR DL+
Sbjct: 241 DEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLY 300

Query: 537 YRLNVFPIVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGNVR 596
           +RLNV  +V PPLR+R ED+PQLV+ L  K+ R+ +++I  I A+    LS+  WPGNVR
Sbjct: 301 FRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVR 360

Query: 597 ELENVIERAVLLTRGTVLNLQL--PELQYPVPSMA-----LPV--PKAEPSQPGEDERQQ 647
           ELENV+ERA++L+R   L+     P+L    P +A      PV    + P    E E+ +
Sbjct: 361 ELENVLERALILSRTDSLSADALPPQLFGDEPQVADMQQERPVVDDDSRPCSLDEAEKGE 420

Query: 648 IIRVLKETNGVVAGPRGAAQRLGLKRTTLLSRMKKWGI 685
           ++R L    G        A  LG+ R TL  ++KK+G+
Sbjct: 421 LLRALDVHGG---HREKTADALGISRRTLQYKLKKFGL 455