Pairwise Alignments

Query, 357 a.a., sugar ABC transporter substrate-binding protein from Serratia liquefaciens MT49

Subject, 346 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  144 bits (364), Expect = 3e-39
 Identities = 104/327 (31%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 22  APTAAPIPAAIANHQGPIRIAVIRNLGSDDNTTQFVSGAVQEGRKLGFQVNTFLTNGDDA 81
           A TA   PA +   +  + IA++R L + D    ++SG   +   LG  +  F +  D A
Sbjct: 21  AATAQEAPAPLDTPE-EVTIALVRYLSTGDFFQAYLSGVETQAAALGVNLRVFDSRQDAA 79

Query: 82  KFQDFVNQAISQKYDGIILSQGRDPYSTALLKRIADSGIAVAAFDTAVQGE-IPGVTITQ 140
              D V+QAI+   DGII+  G         +R  D+GI V AFD  V+   IP V   +
Sbjct: 80  LQADMVDQAIALGVDGIIIQHGLTESMREAAQRAVDAGIKVVAFDVNVENAAIPQV---E 136

Query: 141 QDDASLTDLSFGQLVKDFNGQANIIKLWVAGFPPMERRQAQYQKLLKQQPGIKELESIGA 200
           Q D  L  L+  Q +KD         ++V G  P++RR A ++++    PGI E   IG 
Sbjct: 137 QSDYLLGKLALEQAIKDNGDSFAAGYVYVPGIAPLDRRHAAWEEVKTANPGITEEARIGT 196

Query: 201 VSSDVQGDTANKIGAILAKYPKGKIDAIWGTWDAFSQGAYKALQENGRT-EIKLYSIDIS 259
           + + +    AN+  A L   P   I   +  ++ F++G   A  E G + E+ +YS DIS
Sbjct: 197 LDNPIANANANQARAALQANPN--ISVFFAPYNEFAKGVKIAADELGLSGEMSIYSADIS 254

Query: 260 NQDLALMRAKDSAWKLSVAVDPKLIGAVNLRLVANKIGGEKTPATYEFKAAAIPQALLLS 319
             D+ALMR   SAWK +VA +P ++G V++R +A  + GE   A+       I QA L  
Sbjct: 255 TADIALMREPGSAWKATVATNPAVVGEVSVRALALMLAGEDPGASVIVPPTLITQAFLND 314

Query: 320 HPAATNVASLAKVIPNWGKSDDFIAPW 346
           +    N+  L   +P +  +D  +A W
Sbjct: 315 ND-IRNMEDLGAKMPQFQHADVAMADW 340