Pairwise Alignments

Query, 361 a.a., electron transport complex subunit RsxD from Serratia liquefaciens MT49

Subject, 330 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  220 bits (560), Expect = 5e-62
 Identities = 125/348 (35%), Positives = 187/348 (53%), Gaps = 30/348 (8%)

Query: 14  LHIASSPFTHNQQSTSRIMLWVMLACIPGVAAQVWFFGYGTLIQTALAMLVALLAEGAIL 73
           L ++ SP  H   S  + M  V++A IP     ++FFG G LI TA ++   L  E AI+
Sbjct: 5   LIVSLSPHVHGGDSVQKNMYGVLIALIPAFLVSLYFFGLGALIVTATSVAACLFFEWAIV 64

Query: 74  ALRKLPVRTRLADNSALLTALLLGISLPPLAPWWMIVIGTFFAIVIAKQLYGGLGQNPFN 133
                   T + D SA++T +LL  +LP   P W+I++G  FAI + K  +GGLG NPFN
Sbjct: 65  KFLMKKPATTICDGSAVITGVLLAFNLPSNLPIWIIILGALFAIGVGKMSFGGLGCNPFN 124

Query: 134 PAMVGYVVLLIAFPVQMTSWLPPDELRATALSFQDTLLAIFSGHTAQGATIHELQMGIDG 193
           PA+ G V LL++FPVQMT+W                              + +L   +D 
Sbjct: 125 PALAGRVFLLLSFPVQMTTW----------------------------PVVGQLTSYMDA 156

Query: 194 ISQATPLDGFKTGLRSGHSVEQVLQQ--PLFGGALAGIGWQWVNLGFLAGGLFMLARRLI 251
            + ATPL   K  +    S    +     LF G   G   +   L  L G ++ML +++I
Sbjct: 157 TTGATPLALMKQAIHGDASALSQIPDALTLFIGQNGGCIGEVSALALLLGLVYMLWKKII 216

Query: 252 HWQIPFSMLAAIAVCSGLAWWLDPLQQASPLIHLFSGASMLGAFFIATDPVSASTTPKGR 311
            W IP S++  + V +G+   +DP +  SP++ L SG  MLGA F+ATD V++  + KG 
Sbjct: 217 TWHIPVSIIVTVFVFAGIMHMVDPEKYVSPILQLLSGGLMLGAVFMATDYVTSPMSKKGM 276

Query: 312 LIYGALIGVLVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYG 359
           LIYG  IG+L  +IR++G YP+G++FA+L+ N   PLI+ Y +P+ +G
Sbjct: 277 LIYGVCIGLLTVVIRLFGAYPEGMSFAILIMNAFTPLINTYCKPKRFG 324