Pairwise Alignments

Query, 395 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

Subject, 394 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  243 bits (620), Expect = 7e-69
 Identities = 144/376 (38%), Positives = 216/376 (57%), Gaps = 12/376 (3%)

Query: 25  SAIALL-VTLLAGCDNSAAKNAAPPPPAVSAADVVIKPISQWDTFNGRIEAVQSVQLRPR 83
           SAIA++ +TLL+ C        +P  P V+ A  + + +  WD + GR  A Q V++R R
Sbjct: 3   SAIAIVALTLLSACGGGEGP-PSPAAPEVTVATPLQREVVDWDDYTGRFVAPQDVEIRAR 61

Query: 84  VSGYIDKVNYTEGDEVKKGQVLFTIDDRTYRAAREQAQAELVRARNQAALARSESSRTEK 143
           V+G I  +++ +G +V +GQ LFTID R Y+A   QAQA++ RA+     AR  ++R+  
Sbjct: 62  VNGVITAIHFRDGQDVTQGQPLFTIDPRPYQAQLAQAQAQIARAQAALTNARQVTARSRA 121

Query: 144 LIGSQAISTEVWEQRRSSAAQAQSNVLAAQAQFDMAQLNLDFTRVIAPIDGRASRAMITA 203
           L  +QA+S E  E   ++   A +++ A +A  + AQLNL FT V AP  GR S   ++ 
Sbjct: 122 LASAQAVSKEELETNIAAERSAAADLAAGRASANAAQLNLGFTTVRAPFSGRMSDRKVSL 181

Query: 204 GNLVTAGDSASVLTTLVSLDKVYVYFDVDEATFL-------RYQNDGRRTAKLPVKVGLV 256
           G+ V  G   +VLT +VS+D +   F+  E+ +L       R +    R    PV++ L 
Sbjct: 182 GDSVAEGQ--TVLTRIVSIDPIRFEFEGAESFYLKNLRQDQRGERGSSRNTANPVQIQLA 239

Query: 257 GEDGYPHQGVVDFTDNQLNAGTGTIRMRALLENAERRFTPGLFARVQMPGSAVFNAMLID 316
            E+ Y   G + F D+ ++  +GTIR  A + N  R  TPG+F R ++ GS  + AMLI 
Sbjct: 240 DENEYRWNGRMRFLDSAVDPNSGTIRAYAEVPNPTRFLTPGMFGRARLLGSGTYKAMLIP 299

Query: 317 DKSVMTDQDRKFVYIVDKDGKAQRRDIEVGRVADGLRIVRKGLSAGDRVIVDGMQKVFMP 376
           D++++TDQ R+ VY+V KD KA  R +E+G   +GLRIVR GL+  DRVI+ GM  +  P
Sbjct: 300 DEAIVTDQTRRLVYVVSKDNKATPRPVEIGAKVEGLRIVRDGLAPTDRVIIAGM-GMLQP 358

Query: 377 GMPVAAKTVAINADAS 392
           G PV  K   I  DA+
Sbjct: 359 GAPVTPKKGVIKPDAT 374