Pairwise Alignments

Query, 395 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

Subject, 424 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  249 bits (637), Expect = 8e-71
 Identities = 141/369 (38%), Positives = 226/369 (61%), Gaps = 9/369 (2%)

Query: 23  RLSAIAL-LVTLLAGC---DNSAAKNAAPPPPAVSAADVVIKPISQWDTFNGRIEAVQSV 78
           R SA+ L LV +  G    +  +   AAPPPP V+ A  + + ++QWD   GR EA +SV
Sbjct: 26  RASAVVLPLVAIGVGVGVFNRESPAIAAPPPPTVTVATPLARDLTQWDDHVGRFEASKSV 85

Query: 79  QLRPRVSGYIDKVNYTEGDEVKKGQVLFTIDDRTYRAAREQAQAELVRARNQAALARSES 138
           ++RPRVSG +  V++T+G  V+KGQ+LFTID R + A+  +A+A + +A++  ALA ++ 
Sbjct: 86  EVRPRVSGAVTAVHFTDGAIVQKGQLLFTIDPRPFTASLNEARAGVAQAQSDLALADADL 145

Query: 139 SRTEKLIGSQAISTEVWEQRRSSAAQAQSNVLAAQAQFDMAQLNLDFTRVIAPIDGRASR 198
           +R  +L+   A+S   +++  +    A++++ AAQA+     L++ FT+V API GR S 
Sbjct: 146 ARASRLLTEDAVSKSDYDRLAARVRAARASLAAAQARVGGRALDVQFTQVRAPITGRISD 205

Query: 199 AMITAGNLVTAGDS--ASVLTTLVSLDKVYVYFDVDEATFLRYQNDGRRTAKLP--VKVG 254
             + AGNLV+  D+   ++LTT+ +LD +Y  FD  EA +L+ Q +  ++   P  V++ 
Sbjct: 206 RRVDAGNLVSTADAGGGTLLTTINALDPIYFTFDSSEALYLKAQRERSKSGAAPQQVEIR 265

Query: 255 LVGEDGYPHQGVVDFTDNQLNAGTGTIRMRALLENAERRFTPGLFARVQMPGSAVFNAML 314
           L  E GY  +G VDFTDN ++A +GTIR RA+++N +    PG+F  +++ G +   A+L
Sbjct: 266 LQDESGYNWKGRVDFTDNGISAQSGTIRARAVIDNPDYFLAPGMFGNMRLTGGSPERALL 325

Query: 315 IDDKSVMTDQDRKFVYIVDKDGKAQRRDIEVGRVADGLRIVRKGLSAGDRVIVDGMQKVF 374
           + D +V TDQ RK V++V KDG    R +  G     LR +R GL+  D+V++ G+Q V 
Sbjct: 326 VPDAAVRTDQARKVVFVVGKDGTVTARQVTPGPRIGNLRTIRAGLAPTDKVVIQGLQMV- 384

Query: 375 MPGMPVAAK 383
            PG  V  +
Sbjct: 385 APGAKVTER 393