Pairwise Alignments

Query, 395 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

Subject, 388 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  231 bits (589), Expect = 3e-65
 Identities = 132/346 (38%), Positives = 201/346 (58%), Gaps = 4/346 (1%)

Query: 40  SAAKNAAPPPPAVSAADVVIKPISQWDTFNGRIEAVQSVQLRPRVSGYIDKVNYTEGDEV 99
           S  +  AP PP V AA VV++      T+ GR+ AV++V L+PRVSGYI  V   EG  V
Sbjct: 28  SEEQATAPAPPMVLAAPVVVQDHIPRATYTGRLTAVETVDLKPRVSGYITDVTVPEGQMV 87

Query: 100 KKGQVLFTIDDRTYRAAREQAQAELVRARNQAALARSESSRTEKLIGSQAISTEVWEQRR 159
           ++GQ+LF +D   + A    A+A    A  +  LA++E  R  +L+     + E  +   
Sbjct: 88  RRGQILFRLDSVPFAARHAAARAATREAEARLGLAQAEDVRARRLVAEGVAARERSDVTT 147

Query: 160 SSAAQAQSNVLAAQAQFDMAQLNLDFTRVIAPIDGRASRAMITAGNLVTAGDSASVLTTL 219
           ++  + ++ V +A+A   +A L+L +  V API GR  + ++T GNLV  G++A+ LTT+
Sbjct: 148 ATLREREAQVASARAAERLAALDLRYAGVEAPIAGRVGQILVTRGNLVAGGEAATPLTTI 207

Query: 220 VSLDKVYVYFDVDEATFLRYQNDGRRTAKLPVKVGLVGEDGYPHQGVVDFTDNQLNAGTG 279
           VS+D ++V FDVDEAT+LR   D RR+     +VG+  EDG      +DF  N+L+  TG
Sbjct: 208 VSVDPLHVEFDVDEATYLRSLAD-RRSQSAETRVGVRLEDGSTRSARLDFIGNRLDRATG 266

Query: 280 TIRMRALLENAERRFTPGLFARVQMPGSAVFNAMLIDDKSVMTDQDRKFVYIVDKDGKAQ 339
           TIR RA+L N   R  PGLFA+V +  + +  A+L+ D ++  +Q R+FV ++      +
Sbjct: 267 TIRARAILPNPGGRLAPGLFAQVDVATANIRPALLVSDLAIGIEQGRRFVLVIGAKNMTE 326

Query: 340 RRDIEVGRVADGLRIVRKGLSAGDRVIVDGMQKVFMPGMPVAAKTV 385
            R + +G V  GLR++  GL  GDRV+V G+     PGM V  + V
Sbjct: 327 YRPVTLGPVVGGLRVIETGLRPGDRVVVKGLAG---PGMAVKPRIV 369