Pairwise Alignments

Query, 317 a.a., ketoacyl-ACP synthase III from Serratia liquefaciens MT49

Subject, 354 a.a., 3-oxoacyl-(acyl-carrier-protein) synthase III, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  205 bits (521), Expect = 1e-57
 Identities = 118/321 (36%), Positives = 185/321 (57%), Gaps = 8/321 (2%)

Query: 2   YTKILGTGSYLPVQVRTNADLEKMVDTSDEWIVTRTGIRERRIAAADETVATMGFHAAEK 61
           Y  I G G  +P    TN DL   ++TSDEWI +RTGI +R I+  +   + +   AA++
Sbjct: 3   YATITGWGKCVPPATLTNDDLATFIETSDEWIKSRTGISQRHISHVN--TSELASVAAKR 60

Query: 62  ALEMAGVAKEDIGLIVVATTTSSHAFPSSACQVQQMLGIKDCAAFDLAAACAGFTYALSV 121
           AL  AG+   +I +I++A+ +     P+ A  VQ  +G  +CAAFD+ AAC+GF Y L +
Sbjct: 61  ALAAAGIEGSEIDMIILASASPDTLIPNIASTVQANIGA-NCAAFDINAACSGFLYGLGL 119

Query: 122 ADQYVKNGAVKRALVIGADVLSRTLDPDDRGTIILFGDGAGAVVLGASEEP-GILSTHLH 180
           A   +K+G  K+ LV+GA+ LS  LD   R T +LFGDGAGAVV+ A++ P G+L   L+
Sbjct: 120 ASSQIKSGQCKKVLVVGAERLSFYLDWSRRETAVLFGDGAGAVVVEATDIPGGVLGYELN 179

Query: 181 ADGTYGGLLTLPFKDRQDQ----EKPAYVTMAGNEVFKVAVTELAHIVDETLQANDLDRS 236
            D     +L   F    D+        Y+   G E+FK A+  +  +  + L+   +D+ 
Sbjct: 180 NDPDGRDILKAGFGTAMDRFSADSLDFYIQFDGQEIFKRAINGMNKLSTQVLEKCGVDKD 239

Query: 237 QLDWLVPHQANLRIISATAKKLGMGMDKVVVTLDRHGNTSAASVPAALDEAVRDGRIQRG 296
           ++D ++PHQAN RII     ++ +  +K  V +  +GNTSAA++P A+ +A+  G I+  
Sbjct: 240 EVDLVIPHQANERIIDTLVSRMKIPKEKAFVNIANYGNTSAATIPIAICDALEKGLIKPN 299

Query: 297 QLVLLEAFGGGFTWGSALVRF 317
           Q +L  AFG G T  + L+++
Sbjct: 300 QTILSCAFGAGLTSAALLLQW 320