Pairwise Alignments

Query, 646 a.a., MacB family efflux pump subunit from Serratia liquefaciens MT49

Subject, 406 a.a., ABC transporter, permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  220 bits (561), Expect = 8e-62
 Identities = 133/402 (33%), Positives = 238/402 (59%), Gaps = 17/402 (4%)

Query: 259 QMALKAMNAHRLRTALTMTGIIFGIAAVVTVVALGEGAKQRTLESIKDLGTNVVSIYPGR 318
           ++AL+A+  ++LR  LTM GII G+A+V+T++A+G+G+K+   + I ++G+N++ I+PG 
Sbjct: 8   KIALRALANNKLRAFLTMLGIIIGVASVITMLAIGQGSKRSIQQQISEMGSNMIMIHPGA 67

Query: 319 DF---FDDSIDSIRTLVPADADALASQS-FVDSVSPEVSASENIRFRSKSANASISGVGR 374
           D          +++TL   D +AL  ++ F+ ++SP VS+S  +   + +  +S+SGVG 
Sbjct: 68  DRRGGVRQDPSAMQTLKLTDYEALRDETNFLSAISPNVSSSGQLIAGNNNYPSSVSGVGL 127

Query: 375 DNLRVSGLKLIQGRNFL--DDRNALQEVIIDENARQALFGDFGVEPLGQIVFLGAVPARV 432
           + L +  L +  G  F   D +++ +  +I +     LF D G +P+G+I+    +P RV
Sbjct: 128 EYLDIRQLSVESGDMFTEADIQSSAKVCVIGKTIVDNLFPD-GSDPIGKIIRFNKIPFRV 186

Query: 433 VGVVQSNQDSAPNRIR---VWMPYSTVMYRMVGKSTLSSINVRLKEDVSNEAAVAAIKQL 489
           VGV+++   ++  + +   V  PY+TVM R++  + L  +      +   E A   I ++
Sbjct: 187 VGVLKAKGYNSMGQDQDNIVLAPYTTVMKRLLAVTYLQGVFASALSEDMTEYATDEITEI 246

Query: 490 LTQRHGVK-----DFMLFNLDKYRKSIEHTSMTLTLLILMVASISLIIGSLGVMNIMLVS 544
           L + H +K     DF +    +    +  T+  +T L+  +A ISL++G +G+MNIM VS
Sbjct: 247 LRRNHKLKASDEDDFTIRTQQELSTMLNSTTDLMTTLLACIAGISLVVGGIGIMNIMYVS 306

Query: 545 VTERTHEIGVRMAVGARRSDIMQQFMIEAVLVCLIGGALGILLSFAAGSLFTLLAGGMLT 604
           VTERT EIG+RM+VGAR  DI+ QF+IEA+++ + GG +G+++   A  +   +A   + 
Sbjct: 307 VTERTREIGLRMSVGARGVDILSQFLIEAIMISITGGLIGVIIGCGASWIVKSVAHWPI- 365

Query: 605 AIYSWQAAAVAFCCSTLIGMIFGYLPARKAARMDPVISLASE 646
            I  W +  ++F   T+ G+ FG+ PA+KAA +DP+ ++  E
Sbjct: 366 FIQPW-SVFLSFAVCTVTGVFFGWYPAKKAADLDPIEAIRYE 406