Pairwise Alignments

Query, 319 a.a., putrescine ABC transporter permease PotH from Serratia liquefaciens MT49

Subject, 301 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  380 bits (977), Expect = e-110
 Identities = 176/292 (60%), Positives = 235/292 (80%)

Query: 24  RLQMAHGRKLVIAVPLLWLTLLFLLPFLIVFKISLAELALAVPPYTDLMSWADGKLDIAL 83
           + ++  G+   I VP  WL + F LPF IV KISL+  A+A+PPY  L  +AD  L I L
Sbjct: 6   KFRLPKGQCWTIGVPYFWLLMFFALPFAIVLKISLSTPAVAIPPYEALYQYADESLQIML 65

Query: 84  NFANYLQLTDDPLYLDAYLQSLQVAAVSTVCCLIIGYPLAWAVAHSKASTRNILLLLVIL 143
           N  NY+ + +D LY++AYL SL++A V+T+ CL+IGYP+A+A+A +    + +L+LLV+L
Sbjct: 66  NLGNYILIFEDHLYINAYLGSLKMACVTTIGCLLIGYPMAYAIARAPKQHQTVLILLVML 125

Query: 144 PSWTSFLIRVYAWMGILKNNGILNNFLLWLGVIDQPLVILHTNLAVYIGVVYSYLPFMVL 203
           PSWTSFLIRVYAWMGIL NNG++NN L+WLGVI +P+ +L+TN AVYIG++Y+YLPFM+L
Sbjct: 126 PSWTSFLIRVYAWMGILSNNGVINNLLMWLGVISEPIQMLNTNFAVYIGIIYTYLPFMIL 185

Query: 204 PIYTALTRLDYSLVEASLDLGAKPLKTFFSVIVPLTRGGIIAGSMLVFIPAVGEFVIPEL 263
           P+Y  L++LD SL+EA+ DLG++ L TF+ V +PL++GG+IAGSMLVFIP VGEFVIPEL
Sbjct: 186 PLYANLSQLDGSLLEAAADLGSRSLNTFWKVTLPLSKGGVIAGSMLVFIPVVGEFVIPEL 245

Query: 264 LGGPDSIMIGRVLWQEFFNNRDWPVASAVATVMLLLLILPIIWFHKHQNKEM 315
           LGGPDS+MIG+VLWQEFFNNRDWPVAS++A VML LLI+PI  FH++Q++ M
Sbjct: 246 LGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLALLIIPITLFHRYQSRSM 297