Pairwise Alignments

Query, 628 a.a., sigma-54-dependent Fis family transcriptional regulator from Serratia liquefaciens MT49

Subject, 515 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  258 bits (658), Expect = 6e-73
 Identities = 129/237 (54%), Positives = 166/237 (70%)

Query: 11  PASLAFQNVLDRLAPTDATVLIVGETGTGKELMARYLHHHSLRRDRPFLAVNCGALTESL 70
           P   A +  + ++AP+D TVLI+GETGTGKEL AR +H  S R +  FLA+NCGA  E L
Sbjct: 182 PCMQALKRTIAQVAPSDVTVLILGETGTGKELAARMVHLFSRRSEARFLAINCGAFNEEL 241

Query: 71  AESELFGHEKGAFTGAVDRHQGWFEAAEGGTLLLDEIGELSLPLQVKLLRVLQEREVTRV 130
            ESELFGHE+GAF+GAV + +G FEAAEGGTL LDE+GE+SLP+QVKLLR +QER + RV
Sbjct: 242 LESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLDEVGEMSLPMQVKLLRAVQERTIRRV 301

Query: 131 GSHRPVKVNVRVVAATHVDLANAIRERRFREDLYYRLNVAAVTLPPLRQRRQDIPLLAEH 190
           G    + V+VR++AAT+ DLA      RFR DLYYRLNV  + +PPL +R +D+PLLA++
Sbjct: 302 GGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYYRLNVVVLRMPPLAERMEDVPLLAQY 361

Query: 191 FLTLYARRLGRPQLRLSAEALATLMDYPWPGNIRELENTLHNAVLLSKAPLITPQQL 247
           F    AR  GRP   ++ E L  L  YP+PGN+REL N +  A +L    +ITP  L
Sbjct: 362 FAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRELHNIIERAAVLCAGDVITPADL 418