Pairwise Alignments

Query, 628 a.a., sigma-54-dependent Fis family transcriptional regulator from Serratia liquefaciens MT49

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  275 bits (703), Expect = 3e-78
 Identities = 148/323 (45%), Positives = 208/323 (64%), Gaps = 23/323 (7%)

Query: 20  LDRLAPTDATVLIVGETGTGKELMARYLHHHSLRRDRPFLAVNCGALTESLAESELFGHE 79
           + R APTDA VL+ GE+GTGKEL+AR ++ HSLR ++PFL +NC A+ ++L ESELFG+E
Sbjct: 160 IGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYE 219

Query: 80  KGAFTGAVDRHQGWFEAAEGGTLLLDEIGELSLPLQVKLLRVLQEREVTRVGSHRPVKVN 139
           KGAFTGA +R  G  E A GGT+ LDEIG++ L +Q KLLR+LQE+++ R+G  +P+ V+
Sbjct: 220 KGAFTGATNRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVD 279

Query: 140 VRVVAATHVDLANAIRERRFREDLYYRLNVAAVTLPPLRQRRQDIPLLAEHFLTLYARRL 199
           VR++AAT+ DL  A+ + RFREDLYYRL V  + LPPLR+R +DIP LA +FL  ++R +
Sbjct: 280 VRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREM 339

Query: 200 GRPQLRLSAEALATLMDYPWPGNIRELENTLHNAVLLSKAPLITPQQLRLSAEMA----- 254
             P   ++ EALA L   PWPGN+REL N++H A++ S+   +    L+ + E +     
Sbjct: 340 DMPNPGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRP 399

Query: 255 -------SLPPQGDASLDSFLRQQLVGNDGPLYQRVIDSL--------VRNAFELSQGNQ 299
                   L    D ++   +R+ L  +DG     V DSL        VR A  L+ GN+
Sbjct: 400 GSEGPACDLSLAADQTMQELIRRTLSESDG---DNVFDSLMDHVGRLVVREALHLTGGNR 456

Query: 300 LQAAALLGISRNTLRTHLGHLGL 322
            +AA LLG+SR TL   +   GL
Sbjct: 457 TRAARLLGLSRPTLLAKIEKYGL 479