Pairwise Alignments

Query, 628 a.a., sigma-54-dependent Fis family transcriptional regulator from Serratia liquefaciens MT49

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  267 bits (682), Expect = 8e-76
 Identities = 143/316 (45%), Positives = 204/316 (64%), Gaps = 18/316 (5%)

Query: 10  DPASLAFQN--------VLDRLAPTDATVLIVGETGTGKELMARYLHHHSLRRDRPFLAV 61
           DPA +  Q+        ++  +AP++ATVL+ GE+GTGKEL+AR +H +S RR  P++ V
Sbjct: 143 DPAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTV 202

Query: 62  NCGALTESLAESELFGHEKGAFTGAVDRHQGWFEAAEGGTLLLDEIGELSLPLQVKLLRV 121
           NC ALTE+L ESELFGHEKGAFTGA  R +G F++A+ GT+ LDEIGE SLP+Q KLLR 
Sbjct: 203 NCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRA 262

Query: 122 LQEREVTRVGSHRPVKVNVRVVAATHVDLANAIRERRFREDLYYRLNVAAVTLPPLRQRR 181
           +QERE+ RVGS + ++V+VR++AAT+ DL   +   RFR+DLYYRLNV  + +PPLR+R 
Sbjct: 263 IQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERV 322

Query: 182 QDIPLLAEHFLTLYARRLGRPQLRLSAEALATLMDYPWPGNIRELENTLHNAVLLSKAPL 241
           +DIPLLA HFL  +  + G+     + +A+  L+ + WPGN+RELEN    AV+L     
Sbjct: 323 EDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAERAVVLLVGEY 382

Query: 242 ITPQQLRLSAEMASLPPQGDASLDSFLRQQLVGNDGPLYQRVIDSLVRNAFELSQGNQLQ 301
           I+ ++L          P   A  D      +   +G   + +  + + +A + S+GN+ +
Sbjct: 383 ISEREL----------PHAIAGGDGDATCAVPRFNGMTLEEIERAAILDAMDASEGNKSE 432

Query: 302 AAALLGISRNTLRTHL 317
           AA  LGI+R TL   L
Sbjct: 433 AARRLGITRKTLHAKL 448