Pairwise Alignments

Query, 648 a.a., PTS N-acetyl glucosamine transporter subunit IIABC from Serratia liquefaciens MT49

Subject, 591 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Burkholderia phytofirmans PsJN

 Score =  540 bits (1390), Expect = e-158
 Identities = 281/500 (56%), Positives = 346/500 (69%), Gaps = 20/500 (4%)

Query: 8   QRLGRSLQLPIAVLPVAALLLRFGQPDLLNISFIAQAGGSIFDNLALIFAIGVAATWSKD 67
           QRLGR+L LPIAVLPVA LLLR GQPD+ NI  IA AGG+IFDNL L+FAIGVA  ++KD
Sbjct: 10  QRLGRALMLPIAVLPVAGLLLRLGQPDVFNIKMIADAGGAIFDNLPLLFAIGVAVGFAKD 69

Query: 68  NAGSAALAGAVGYFILTKAMVTINPAINMGVLAGIITGLVGGAVYNRWSGIKLPEFLSFF 127
           N G A LAGA+GY I    M  IN  +NMGVL+GI+ G+V G +YNR+  IKLP++L+FF
Sbjct: 70  NNGVAGLAGAIGYLIEVAVMKDINDKLNMGVLSGIVAGIVAGLLYNRYKDIKLPDYLAFF 129

Query: 128 GGKRFVPIATGFFCLILAAIFGYIWPPVQNAIHAGGEWIVSMGAVGSGIFGFVNRLLIPT 187
           GGKRFVPI TG  CL+L   FGY+W PVQ  I   G W+ + GA+G+ +FG +NRLL+ T
Sbjct: 130 GGKRFVPIVTGVVCLVLGIAFGYVWQPVQAVIDTAGHWLTTAGALGAFVFGVLNRLLLVT 189

Query: 188 GLHQVLNTIAWFQIGEFTNAAGTIFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALA 247
           GLH +LN++ WF  G FT   G    GD++RF+AGD TAG FM+GFFP+MMFGLP A LA
Sbjct: 190 GLHHILNSLTWFVFGTFTPPGGAAVTGDLHRFFAGDPTAGTFMTGFFPVMMFGLPAACLA 249

Query: 248 MYFAAPKERRPMVGGMLLSVALTAFLTGVTEPLEFLFMFLAPLLYLVHAILTGISLFVAT 307
           M+  APKERR +VGG+L S+ALT+FLTGVTEP+EF FMFLAP+LY++HA+LTGISL + +
Sbjct: 250 MFHEAPKERRAVVGGLLFSMALTSFLTGVTEPIEFSFMFLAPVLYVIHALLTGISLAICS 309

Query: 308 LLGIHAGFSFSAGAIDYVLMYNLPAASKNVWMLVVMGLVAFAVYFVLFSIIIRAFNLKTP 367
            LGIH GF+FSAGAIDYVL Y L   S   W  + +GLV   VY+ LF   IR FN+ TP
Sbjct: 310 ALGIHLGFTFSAGAIDYVLNYGL---STRGWWAIPIGLVYMVVYYGLFRFFIRKFNMATP 366

Query: 368 GREDASDD----------IVAPEANSNTDEGLRALSRSYIGAIGGSDNLTGIDACITRLR 417
           GRE A+ D           V+P A +      R     YI A+GG+ NL+ +DAC TRLR
Sbjct: 367 GREPAAADEQVDSFAAGGFVSPVAGTAVPRAQR-----YIAALGGASNLSVVDACTTRLR 421

Query: 418 LSVKDSSKVLDASCKRLGASGVVKLNKQTVQVIVGSKAEAIADGMRAVIAAGPVPAAEVA 477
           LSV DS+KV +   K +GA GV+K     VQVI+G +A+ IAD +R VIA G   A  V 
Sbjct: 422 LSVVDSNKVSENELKTIGARGVLKRGSTNVQVIIGPEADIIADEIRTVIAQGGGDA--VK 479

Query: 478 PAAGVTAVKAQAVPNAVKVA 497
           PAA   A    A P A  VA
Sbjct: 480 PAAAAPAQVVAAAPVAASVA 499