Pairwise Alignments

Query, 265 a.a., helix-turn-helix transcriptional regulator from Serratia liquefaciens MT49

Subject, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 22/274 (8%)

Query: 3   RFDALDGLELLVADFSDHRFDVHWHETWSIGVVLRGANNNSAKGDADGIVSRGQISLIAP 62
           R   L G+EL  A+F+   FD H H  + +GVV +GA     KG    +   G +S + P
Sbjct: 11  RHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHG-LSTLNP 69

Query: 63  GQMHAGTVLGAAGCHYFMFYPSHEMLLDAAENMEMPLPPAVKGKHIGHAPFANR------ 116
            + H G    A G    +     + +   ++ M        +  H  +AP  +       
Sbjct: 70  DETHDGQSRDAEGYRVKVMSIPVDFMNAISQEMG-------QATHFFNAPMIDDSALYQY 122

Query: 117 LCEAATVLTAAQSSRFDREVAWSHCVADLLAVCSPRRAPLTDAGIAPGL-----RRAKEY 171
             +   +LT  Q +    E   SH +  +  + +   A     G   GL        K+ 
Sbjct: 123 FIQLHNLLTQEQCTELAAE---SHLLNFMQLLLTRHPAGTLKLGQDQGLSLQQLNLIKQK 179

Query: 172 LHDNPAREVRLERLAQAAGLSRFHLCRQFSATFGLSPSRYQRQLRLQQAKALLSRGGDIA 231
           +HD P +  +LE LA    LS+F   RQF    G++P  Y +++RL+ AK  L+ G  + 
Sbjct: 180 IHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTHGTLVV 239

Query: 232 EIAIACGFADQSHLGRTFKSSYGVTPRGYRDRCL 265
           ++A   GF DQSHL + FK ++ ++P  ++ R L
Sbjct: 240 DVAQQLGFFDQSHLNKAFKQAFLLSPVQFQRRML 273