Pairwise Alignments

Query, 395 a.a., multidrug efflux RND transporter periplasmic adaptor subunit SdeX from Serratia liquefaciens MT49

Subject, 371 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  362 bits (928), Expect = e-104
 Identities = 194/368 (52%), Positives = 255/368 (69%), Gaps = 5/368 (1%)

Query: 9   PLAAVLMLSGSLVLTGCNDKETQQQGAQAPAPEVGVVTLKAEPLNITTDLPGRTAAYRIA 68
           PL   + ++ +L+L GC     +Q   Q PA EVGVVTL+AEP+ +T++L GRT A  IA
Sbjct: 2   PLRTPIAVTAALLLAGCGG--AKQMPPQGPA-EVGVVTLRAEPVTMTSELTGRTTATAIA 58

Query: 69  EVRPQVSGIILKRNFVEGSDIKAGTSLYQIDPATYQAAYDSAKGDLAKAQASASIARVTV 128
           E+RPQV GII  R F EGS ++AG  LYQIDP  Y A+ + A   LA AQAS   A   V
Sbjct: 59  EIRPQVDGIIKARLFTEGSYVRAGQPLYQIDPRLYVASRNQAAAQLASAQASVITANAKV 118

Query: 129 NRYKPLLGTSYISKQDYDTAVSNLQQAEAAVVAAKAAVETARINLAYTKVTSPISGRIGK 188
            RY+ L G   +SKQ+ D AV+  +  EA+V    A +++A++NL +T+V +PISGRIG+
Sbjct: 119 ARYRQLGGADAVSKQEIDDAVATARAGEASVRQYAATLDSAKVNLGFTRVYAPISGRIGR 178

Query: 189 SAVTEGALVTNGQATALSTVQQLDPMYVDVTQSSNDFLRLKQELASGALKQENGKAKVKL 248
           S VT+GALV  GQATAL+T+QQLDP+YVD+ QSS+  L L++ LA G +        V+L
Sbjct: 179 SNVTQGALVGTGQATALATIQQLDPIYVDIQQSSDALLALRESLAKGDVLP--ASTTVQL 236

Query: 249 LLENGAQYAQEGTLEFSDVTVDETTGSITIRAVFPNPNDTLLPGMFVRARLDEGVRSDAL 308
           +L NG  Y Q GT+EF +V+VD  +G +T+RA FPNPN+ LLPGMFVR +  + V  + +
Sbjct: 237 VLSNGRVYPQTGTIEFGEVSVDPGSGMVTLRARFPNPNNLLLPGMFVRVKAPQAVVRNGI 296

Query: 309 LVPQQGVTRNPRGDATALVVGADDKVELRTLKADQAIGDKWLVTDGLKAGDRVIVTGLMK 368
           L PQQG+TR+ +G+ATALVV  D KVE RT+   QAIGDKWLVT GLKAG+R+IV G  K
Sbjct: 297 LAPQQGITRDAKGNATALVVSRDGKVEQRTVSVAQAIGDKWLVTGGLKAGERLIVEGTDK 356

Query: 369 VRPGAQVK 376
            RPGA+VK
Sbjct: 357 ARPGAEVK 364