Pairwise Alignments

Query, 615 a.a., protein translocase subunit SecD from Serratia liquefaciens MT49

Subject, 634 a.a., preprotein translocase subunit SecD from Herbaspirillum seropedicae SmR1

 Score =  502 bits (1292), Expect = e-146
 Identities = 277/627 (44%), Positives = 407/627 (64%), Gaps = 30/627 (4%)

Query: 2   LNRYPLWKYLMLIVVIFIGLLYALPNIYGEDPAVQITGARGVAASETTL-DQVRTVLEKD 60
           +NRY LWKY ++++ +  G++Y +PN +GE PAVQI+ A+     E  +  +V  +L++ 
Sbjct: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60

Query: 61  KITSKSIALENG----AILARFSNPDIQLRAREALMAELGDK-----FVVALNLAPATPA 111
            + ++S+A +N     ++ ARF+  DIQ +A+  L  EL        ++VA NL P TP 
Sbjct: 61  NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120

Query: 112 WLAMLGAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDTLRSELREKGIPYASIRKL 171
           WL  L A PM LGLDLRGGVHFLM+VD+   L+K  +    ++RS LR+K I ++ I + 
Sbjct: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISR- 179

Query: 172 DNNGVEVRFRDDAARDQAISYLSPRQRDMVFSANGSNTLK--ANLTDARLSEAREYAVQQ 229
             + +E+ FRD   R++A + L   Q  ++  A   + LK  A L    L + +E  V+Q
Sbjct: 180 SGDSIEISFRDADTRNKARAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239

Query: 230 NITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNAD 289
           NI+ L  RVN+LGVAEPL+QRQG+DRIVVELPG+QD +RAK+I+G TATLE R+V+ +  
Sbjct: 240 NISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVV 299

Query: 290 VTAAANGRVPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSSTDEYNQPQVNISLDSAG 349
                   +P  SE+    +G PVVL K  +LTGD+I+++++S DE +QP V+I L+  G
Sbjct: 300 RGTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDG 359

Query: 350 GTAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEEVINVANIQSRLGNSFRIT 409
           G  M   T+D +GK MA +  E K  G              EV+ VA I+S LG+ F+IT
Sbjct: 360 GRKMREATRDKVGKAMAIVLFE-KGKG--------------EVLTVATIRSELGSRFQIT 404

Query: 410 GIGNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEACLWGLVASIVFMV 469
           G+G+P  A  L+LLLRAG+L AP+ I+EERTIGP LG  NI +G ++ L+G +A  +FMV
Sbjct: 405 GMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMV 464

Query: 470 VWYRKFGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIK 529
           ++Y+ FG  +  AL  N++L+V ++S L   TLT+PGIA I L L +A+D+NVLINERI+
Sbjct: 465 IYYQLFGFFSALALSVNVLLLVALLSTLQ-VTLTLPGIAAIALALGMAIDSNVLINERIR 523

Query: 530 EELKNGRSVQQAIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIKGFAITTAIGVATS 589
           EEL+ G S Q AI  G+  A+++I+D+N+TTLI  + L   G+G+I+GFA+   +G+ TS
Sbjct: 524 EELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTS 583

Query: 590 MFTAIVGTRAIVNLLYG-GKRINKLSI 615
           MF+A+  +R +VNL YG  KR++ L+I
Sbjct: 584 MFSAVFFSRGVVNLWYGRKKRLSSLAI 610