Pairwise Alignments

Query, 615 a.a., protein translocase subunit SecD from Serratia liquefaciens MT49

Subject, 532 a.a., protein translocase subunit secD from Caulobacter crescentus NA1000

 Score =  283 bits (723), Expect = 2e-80
 Identities = 185/519 (35%), Positives = 281/519 (54%), Gaps = 36/519 (6%)

Query: 110 PAWLAMLGAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDTLRSELREKGIPYASIR 169
           P WL     + + LGLDL+GG + + EVD D    +  +  ++ +R+ LR + I +  + 
Sbjct: 37  PDWLPK---QKLNLGLDLQGGSYLMYEVDTDALRKERLKNLVEDVRTVLRGEQITFGELA 93

Query: 170 KLDNNGVEVRFRDDAARDQAISYL----------SPRQRDMVFSANGSNTLKANLTDARL 219
           ++ N  V +R  D A  D+A + L          S   RD+         L+ +      
Sbjct: 94  EV-NGTVRLRIADAAKVDEAANLLRRSVGSPFAGSISGRDVSVDKRDDQRLELSFIPEAA 152

Query: 220 SEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATL 279
           ++    AV Q+I  +R R++ LG  EP + RQG+DRIV++  G  D  R K ++G TA L
Sbjct: 153 AQDASMAVDQSIETIRRRIDTLGTKEPNITRQGADRIVIQAAGESDPERLKAVVGKTAKL 212

Query: 280 EFRLVNTNADVTAAANGRVPGDSEV--KDTREGQPVVLYKRVILTGDHITDSTSSTDEYN 337
            F++V+ +      A GR+P  SE    D R     V+ KR +++GD + DS  S D+  
Sbjct: 213 TFQMVDDSVTPEDIAAGRIPPGSEALPSDDRYQAAYVVRKRALVSGDELVDSRQSFDDRG 272

Query: 338 QPQVNISLDSAGGTAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEEVINVAN 397
            P V+   + +G     + T  N+GK  A +            +GR I       IN A 
Sbjct: 273 APAVSFKFNGSGSRKFGDATARNVGKRFAIVL-----------DGRII---SAPTINGAI 318

Query: 398 IQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGQQNITQGLEAC 457
               LG S  ITG      A  L+LLLR+GAL AP+++ ++ T+G  LG   +  G  + 
Sbjct: 319 ----LGGSGIITGSFTAESASDLALLLRSGALPAPLKVEQQNTVGAELGADAVRAGAIST 374

Query: 458 LWGLVASIVFMVVWYRK-FGMIATTALVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAV 516
           L   +  +VFM++ Y   FG I+  AL+ N +LIV  MSL   ATLT+PGIAG++LTLAV
Sbjct: 375 LVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAMSLTQ-ATLTLPGIAGLILTLAV 433

Query: 517 AVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIK 576
           AVDANVLI ER+++E + G+S   A   G+  A ++I+DAN+TTL+ A I++A G G ++
Sbjct: 434 AVDANVLIYERMRDEARAGKSPILAADAGFSRAMTTIIDANVTTLVAAGIMFAFGAGPVR 493

Query: 577 GFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615
           GFA T +IGV TS+FTA++ ++ ++   +   R  KL I
Sbjct: 494 GFAWTLSIGVFTSVFTAVLVSQLLIGWWFRAARPKKLPI 532



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 26/123 (21%)

Query: 8   WKYLMLIVVIFIGLLYALPNIYGED---------PAVQI-----------------TGAR 41
           WK +++   +  G+L+ LPN+  +          P  ++                 T A 
Sbjct: 7   WKIVLVTFSVIFGILFTLPNLLPQKTLDSFPDWLPKQKLNLGLDLQGGSYLMYEVDTDAL 66

Query: 42  GVAASETTLDQVRTVLEKDKITSKSIALENGAILARFSNPDIQLRAREALMAELGDKFVV 101
                +  ++ VRTVL  ++IT   +A  NG +  R ++      A   L   +G  F  
Sbjct: 67  RKERLKNLVEDVRTVLRGEQITFGELAEVNGTVRLRIADAAKVDEAANLLRRSVGSPFAG 126

Query: 102 ALN 104
           +++
Sbjct: 127 SIS 129