Pairwise Alignments

Query, 353 a.a., DNA polymerase IV from Serratia liquefaciens MT49

Subject, 353 a.a., DNA damage-inducible protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  232 bits (591), Expect = 1e-65
 Identities = 141/333 (42%), Positives = 198/333 (59%), Gaps = 7/333 (2%)

Query: 9   MDCFFAAVEMRDDPSLRDIPLAIGGSADRRGVISTANYPARRYGVHSAMSTAMALKLCPH 68
           MD F+A+VE RD P LR  PLA+G  A+ RGV++ A+Y ARRYGV SAMS+  A +LCP 
Sbjct: 1   MDAFYASVEQRDHPELRGKPLAVG-HAEERGVVAAASYEARRYGVRSAMSSQKAKRLCPQ 59

Query: 69  LKLLPGRMAAYKEASLHIREIFARYTPLIEPLSLDEAYLDVTDCSQCNGSATLIAEQIRQ 128
           L  + GRM  YK  S  I EIF  YT +IEPLSLDEA+LDVT+  +    A  IA++I+ 
Sbjct: 60  LIFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKGISLAVDIAKEIKL 119

Query: 129 AIADELNLTASAGVAPIKFLAKIASELNKPNGQYVITPAQVPAFLQQLPLSKIPGVGKVT 188
            I ++LNL ASAGV+  KFLAKIAS+  KP+G   I P Q   F+  LP+    GVG VT
Sbjct: 120 RIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAGLPIESFWGVGPVT 179

Query: 189 AKRLEEVGLITCADVQQYDLAALLKRFGKFGRVLWERCQGIDLREVSPERLRKSVGVERT 248
           AK++  +G+     +++  L  L   FGK G + +E  +GID R V   R+RKS+G ERT
Sbjct: 180 AKKMHLLGIHNGLQLRKCSLEMLTAHFGKVGALYYECSRGIDERPVEAVRIRKSIGCERT 239

Query: 249 LAEDIHAWEECEALIVDKLYPELEMRLRKVKPDLHIARQGVKLKFQDFQQTTQE--HVWP 306
           L  DI       ++I++  +  +E+  R  + +       +K+KF DF Q T+       
Sbjct: 240 LERDISVH---SSVIIELYHVAVELIERLQRKEFKGNTLTLKIKFHDFSQITRSITQSQE 296

Query: 307 VLNKDDLINVARQAW-SERREGRGVRLVGLHVT 338
           +   D ++ +A++   S   E   +RL+GL V+
Sbjct: 297 LYTLDRILPLAKELLKSVEYEQHPIRLIGLSVS 329