Pairwise Alignments

Query, 256 a.a., basic amino acid ABC transporter substrate-binding protein from Serratia liquefaciens MT49

Subject, 248 a.a., extracellular solute-binding protein family 3 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  120 bits (300), Expect = 3e-32
 Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 9/243 (3%)

Query: 6   VVIGACLAATLSASVLAAEPTYVVGSGGTYRPFEFENSSKQLEGFDIDIIKAVAKAENFQ 65
           + +G  L A L A  +A +   VV     ++PFEF+    +  GFDI++ +AVAK    +
Sbjct: 7   IALGLALVAALCAPAMAKK--LVVAHDTNFKPFEFKGEDGKYTGFDIELWQAVAKIVGVE 64

Query: 66  VKLVNTPWEGIFATLNSGDRDIIISGITITDKRKQMVDFSAPYFPAEQAIVVPK-DSGVD 124
            +L    + GI   L +G+ D+ I+GITI  +R+Q++DFS PY+ +   I+V + D+ + 
Sbjct: 65  YELQPMDFNGIIPGLQTGNIDVGIAGITIKAERQQVIDFSDPYYDSGLMILVREGDTAIK 124

Query: 125 SIAALKALKVGV-VNSSTGDIVVSDVLGKNNTAIKRFDNTPLMLQELYEDGIGAAVGDVG 183
           S+  LK   V     +S+ D V +    K    +K F N   M  EL   G  A V D+ 
Sbjct: 125 SVEDLKGKIVATKTATSSVDFVKACASAKE---VKLFPNNDGMFFELMSGGADAVVFDMP 181

Query: 184 VAKFYIKTHPEKEFKLVSDAKFERQYFGIAVAKGNDELRGKINAGLKKIIADGTYAKIYQ 243
           V K +  T  + + K V    ++ Q +GI   KG+  L  K+N  LKK  ADGTY K+Y 
Sbjct: 182 VVKEFAMTAGKGKVKTVGPL-YQGQSYGIGFPKGS-PLVAKVNEALKKAKADGTYEKLYI 239

Query: 244 TWF 246
            WF
Sbjct: 240 KWF 242