Pairwise Alignments

Query, 479 a.a., H(+)/Cl(-) exchange transporter ClcA from Serratia liquefaciens MT49

Subject, 859 a.a., CBS from Synechococcus elongatus PCC 7942

 Score =  182 bits (463), Expect = 3e-50
 Identities = 132/399 (33%), Positives = 212/399 (53%), Gaps = 28/399 (7%)

Query: 81  LAFILSAALAMLGYYLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVIPVKFIGGMGTLG 140
           L  +L   L  +  +LV+RFAPEA GSGI +++ AL   R     RV  VK    M  +G
Sbjct: 55  LQLLLPPILGAIAGWLVQRFAPEAEGSGISQVQAALSGSRIALNLRVAIVKIASTMLVVG 114

Query: 141 AGMVLGREGPTVQMGGNVGRMVLDIFRMRGAEARHSLLATGAAAGLSAAFNAPLAGILFI 200
           +G+ LGR+GPTVQ+G ++   +   F     + R  L+A+GAAAGL+A FNAPLAG++ +
Sbjct: 115 SGLPLGRQGPTVQVGASLAGQMSQWF-PTSPDYRRQLIASGAAAGLAAGFNAPLAGVMLV 173

Query: 201 IEEMRPQFRYNLI--SIKAVFIGVIMSSVVFQLFNGEGSVIAVGKLSSAP----INTLWL 254
           +E++        +  ++ A FIG ++S ++     G  S+    ++ +AP    +  L +
Sbjct: 174 LEQLLHDVSSFTLGTAVLAAFIGAVVSGIL-----GSQSLSFSSEIVAAPAALTVPELPV 228

Query: 255 YLVLGAIFGAVGVMFNALVFRTQDMFARLHGGKMRKILLMGGLLGGICGILGLIQPEAAG 314
            L+LG   G +G++FN  +  +Q  + RL    ++ +     +  GI  +L L+ P A  
Sbjct: 229 VLLLGLFAGGLGILFNRGLAFSQRCYERL---PLKGLPWRVAIASGISALLLLLLPAALR 285

Query: 315 GGFG---LIPIAAAGNYSVGMLMFIFITRVITTLLCFGSGAPGGIFAPMLALGTLFGTAF 371
            G      + I  +G+ ++ ML   F      TL+  GSGA GGIFAP L LG+  G   
Sbjct: 286 QGLSNPFRVTIPDSGSIALLMLAINF----GLTLVAAGSGASGGIFAPALVLGSSLGLGV 341

Query: 372 GLAGGHLFPEYGI-----EAGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPMI 426
            L+   +F + GI        T+A+AGMGA+F+A  + P+T IV+V EMT ++  +LP++
Sbjct: 342 VLSIQAIFLQVGIPLRIDAPATYALAGMGAMFSAVTQGPITAIVIVFEMTRDFNAVLPLM 401

Query: 427 ITCLGATLVAQFLGGKPLYSSILARTLQRQEASQASEAA 465
           +  + A  +A  L   P  ++ +   L    +S    AA
Sbjct: 402 VASITAYGIAS-LARSPSKAAAVVDALPTLNSSLGLTAA 439



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 19/173 (10%)

Query: 41  LVGTMAGLLGVAFDKAVDWVQQQRFSALAQVADYWILVWPLAFILSAALAMLGYYLVRRF 100
           L+G  AG LG+ F++ + +  Q+ +  L      W +   +A  +SA L +L    +R+ 
Sbjct: 231 LLGLFAGGLGILFNRGLAF-SQRCYERLPLKGLPWRVA--IASGISALLLLLLPAALRQG 287

Query: 101 APEAGGSGIPEIEGALEELRPVRWWRVIPVKFIGGMGTLGAGMVLGREGPTVQMGGNVGR 160
                   IP+  G++  L       ++ + F   +   G+G   G   P + +G ++G 
Sbjct: 288 LSNPFRVTIPD-SGSIALL-------MLAINFGLTLVAAGSGASGGIFAPALVLGSSLGL 339

Query: 161 MVL----DIFRMRGAEARHSLLATGAAAGLSAAFNA----PLAGILFIIEEMR 205
            V+     IF   G   R    AT A AG+ A F+A    P+  I+ + E  R
Sbjct: 340 GVVLSIQAIFLQVGIPLRIDAPATYALAGMGAMFSAVTQGPITAIVIVFEMTR 392