Pairwise Alignments

Query, 479 a.a., H(+)/Cl(-) exchange transporter ClcA from Serratia liquefaciens MT49

Subject, 463 a.a., chloride channel protein from Synechococcus elongatus PCC 7942

 Score =  337 bits (864), Expect = 5e-97
 Identities = 188/433 (43%), Positives = 266/433 (61%), Gaps = 6/433 (1%)

Query: 23  RQLLRRDKTPVAILFMAALVGTMAGLLGVAFDKAVDWVQQQRFSALAQVADYWILVWPLA 82
           R+ L   +    +L  AA+ G M GL+G AF          R   LA +     LV   +
Sbjct: 20  RRFLEASEGLNLVLLWAAIAGLMVGLVGGAFRWLTSATLNGRVRWLASLPQGPELV--AS 77

Query: 83  FILSAALAMLGYYLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVIPVKFIGGMGTLGAG 142
            +LS+ +  LG+YL+RRFAP+  GSGIP+IEG L     + WWRV+PVKF+ G+ TLG+G
Sbjct: 78  VLLSSGMVALGFYLMRRFAPDTSGSGIPQIEGWLAGFFSLFWWRVLPVKFLAGILTLGSG 137

Query: 143 MVLGREGPTVQMGGNVGRMVLDIFRMRGAEARHSLLATGAAAGLSAAFNAPLAGILFIIE 202
           MV+GREGPT+QMGG +G+MV D FR    +AR  L+A  A AGL+ AFNAPLAGI+F+ E
Sbjct: 138 MVMGREGPTIQMGGAIGQMVSDWFRASTEQAR-VLVAASAGAGLATAFNAPLAGIVFVFE 196

Query: 203 EMRPQFRYNLISIKAVFIGVIMSSVVFQLFNGEGSVIAVGKLSSAPINTLWLYLVLGAIF 262
           EMRP F+  L + +AV I  I +++  QL  G+G  I + +  + P+++LW++++LG   
Sbjct: 197 EMRPTFQNRLRAYQAVTIACITATIGLQLLLGKGPTIELAQFGAPPLSSLWVFVLLGLAC 256

Query: 263 GAVGVMFNALVFRTQDMFARLHGGKMRKILLMGGLLGGICGILGLIQPEAAGGGFGLIPI 322
           GA+G  FN L+  + + FA LHG  +R   L G  +GG  G++  + P A   G  L+  
Sbjct: 257 GAIGYSFNRLLVWSLNCFATLHGLPLR---LTGLGVGGFIGLVSWLYPPATNSGENLVLW 313

Query: 323 AAAGNYSVGMLMFIFITRVITTLLCFGSGAPGGIFAPMLALGTLFGTAFGLAGGHLFPEY 382
           A      +  L+ +   R   TLLC+GSGAPGGIFAP+L++ TLF    G       P  
Sbjct: 314 AFDTVEPIHTLLLLCSLRFALTLLCYGSGAPGGIFAPLLSIATLFSLGLGQLTIDWLPGL 373

Query: 383 GIEAGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLVAQFLGGK 442
            +     AIAGMGA  AAT+++PLT I+L  E+T NYQLILP++++C  ATL+A  LG +
Sbjct: 374 LLPPEVLAIAGMGAFVAATIQSPLTAILLTTEITSNYQLILPIMVSCSAATLIAHGLGSR 433

Query: 443 PLYSSILARTLQR 455
           P+Y+ +L R L +
Sbjct: 434 PIYTVLLERQLAK 446