Pairwise Alignments

Query, 479 a.a., H(+)/Cl(-) exchange transporter ClcA from Serratia liquefaciens MT49

Subject, 427 a.a., chloride channel protein from Herbaspirillum seropedicae SmR1

 Score =  138 bits (347), Expect = 4e-37
 Identities = 124/442 (28%), Positives = 203/442 (45%), Gaps = 39/442 (8%)

Query: 26  LRRDKTPVAILFMAALVGTMAGLLGVAFDKAVDWVQQQRFSALAQVADYWILVWPLAFIL 85
           LRR      IL+  A++    GL+ V + +A++ +    F ++   + +      L  +L
Sbjct: 11  LRRLWVEYGILWSGAVI---VGLVAVLYAQAIE-IGFGVFRSIQHRSPW------LPLLL 60

Query: 86  SAALAMLGYYLVRRFAPEAGGSGIPEIEGAL-----EELRPVRWWRVIPVKFIGGMGTLG 140
           + A+     +L RR+ P + GSGIP+    L     E    +   RV+  K +  +  + 
Sbjct: 61  TPAVCAACVWLTRRYFPGSEGSGIPQAIATLHGDTAERGSTLLSLRVLLGKIVLSVVAIA 120

Query: 141 AGMVLGREGPTVQMGGNVGRMVLDIFRMRGAEARHSLLATGAAAGLSAAFNAPLAGILFI 200
            GM +GREGPTVQ+G  +   +  ++          L+  GAAAGL+AAFN PLAGI+F 
Sbjct: 121 GGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFA 180

Query: 201 IEEMRPQFRYNLISIKAVFIGVIMSSVVFQLFNGE----GSVIAVGKLSSAPINTLWLYL 256
           IEE+   F      +  V   +I + +V    NG     GS+   G+ S   I  +   +
Sbjct: 181 IEELSRSFEQRASGV--VITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAV---I 235

Query: 257 VLGAIFGAVGVMFNALVFR-TQDMFARLHGGKMRKILLMGGLLGGICGILGLIQPEAAGG 315
           V   + G  G +F  L+   T+ +   L   +  + +    + G I  ++G+    AAGG
Sbjct: 236 VTAVLMGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAVCGFIVAVIGV----AAGG 291

Query: 316 ---GFGLIPIAAAGNYSVGMLMFIFITRVITTLLCFGSGAPGGIFAPMLALGTLFGTAFG 372
              G G        N   G+ +F    +  + +  +  G PGGIFAP L++G  FG    
Sbjct: 292 ATFGSGYEQAHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGFGNLLH 351

Query: 373 LAGGHLFPEYGIEAGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPMIITCLGA 432
           L  G      G          M    AA  ++P+T  V+V+EM D + L++ ++ T L A
Sbjct: 352 LLFG------GTSLPMLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIA 405

Query: 433 TLVAQFLGGKPLYSSILARTLQ 454
           + V++     PLY ++  R L+
Sbjct: 406 SAVSKVF-APPLYETLAERYLK 426