Pairwise Alignments

Query, 198 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Serratia liquefaciens MT49

Subject, 207 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase from Herbaspirillum seropedicae SmR1

 Score =  213 bits (542), Expect = 2e-60
 Identities = 105/170 (61%), Positives = 119/170 (70%), Gaps = 2/170 (1%)

Query: 5   QGWIVGVTRVVSPHCDLRPNEEAPSLLVIHNISLPPGEFGGPYIDRLFTGTLDPADHPYF 64
           +GW  G  R  SP+CD RP      LLVIHNISLPPGEFGG YI  LF   LD   HPYF
Sbjct: 16  EGWCQGARREPSPNCDDRPEGVVSQLLVIHNISLPPGEFGGSYIADLFCNRLDFDAHPYF 75

Query: 65  SDIHQLRVSAHCLIRRDGEIIQYVPFDRRAWHAGVSSYQGRERCNDFSIGIELEGTDHVA 124
             +  LRVSAH LIRRDGE++Q+VP  RRAWHAGVSS++GRERCNDFSIGIELEGTD   
Sbjct: 76  DQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCNDFSIGIELEGTDFTP 135

Query: 125 FTPQQYQSLNVVTALLIRHYPTLAAHITGHSNIAPGRKTDPGPAFDWGLY 174
           FTP QY +L  ++  L+  Y   A  + GH +IAP RKTDPGP FDW  Y
Sbjct: 136 FTPAQYDALLGLSQALVSRYGLSA--VAGHEHIAPLRKTDPGPFFDWQRY 183