Pairwise Alignments

Query, 399 a.a., protein transport protein HofC from Serratia liquefaciens MT49

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (581), Expect = 2e-64
 Identities = 136/402 (33%), Positives = 226/402 (56%), Gaps = 8/402 (1%)

Query: 4   LRLFLWQAIDPHGQLREGELMSGKKNEVSQWLIEQGLQPCQINSGK-----RISPGQWRG 58
           L+ + W+ I+ +G+   G++++  + EV   L +Q +Q  ++  G      R++  + + 
Sbjct: 9   LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTH-RVKS 67

Query: 59  EPLIQFTRQLATLLQAGLPLVSGLQLLAAEHPSAAWRCLLREVSEQVRQGQPFSEVIAEQ 118
           + +   TRQLAT+L  G+P+V  L+L+   H  A  + +L ++++ V  G P S+ +   
Sbjct: 68  KDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTA 127

Query: 119 HAVFPLIYRQLIAIGELTGHLDECCLQLAQQQEAQQKLQKKVIKALRYPLFICAVALLVS 178
            A F  +Y  L+  GE++G+L E   +LA  +E  ++L+ KVIKAL YP  +  VAL VS
Sbjct: 128 SAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVS 187

Query: 179 ILMLVMVLPEFAGVYQSFNAPLPWFTQGLLNLSTLLIDSGPWLAAILVCMAYTYLRRLHP 238
            LML MV+PEF  +++ F A LPWFTQ +L LS  +     W A I +  A   L+ L  
Sbjct: 188 YLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLW-AFIAIAAAIFGLKALRK 246

Query: 239 QP-QWRRREQAALLRLPLIAHLIKGGCLSQIFRILAMTQQAGLSLVDGLAAAALSVDNLF 297
              Q R +     L+ P+I +++    +++  R LA +  AG+ ++  L   A +  N+ 
Sbjct: 247 NSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVH 306

Query: 298 YRQAIDNIRQQISQGQTFHRALEQQALFPTLCQQLVRVGEESGSLDTLLGKLAAWHEQQT 357
           +  AI+ + +  + G   + A+     FP +  Q+V +GEESG LD +L K+A  +E + 
Sbjct: 307 FETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEV 366

Query: 358 FELADTLAQTLEPLLMLVVGGIVGTLVIAMYLPIFQLGNVLG 399
               D L + LEPL+++ +G +VG LV+AMYLPIF L +VLG
Sbjct: 367 DNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408