Pairwise Alignments

Query, 399 a.a., protein transport protein HofC from Serratia liquefaciens MT49

Subject, 415 a.a., type II secretion system protein F from Herbaspirillum seropedicae SmR1

 Score =  197 bits (501), Expect = 5e-55
 Identities = 126/407 (30%), Positives = 209/407 (51%), Gaps = 18/407 (4%)

Query: 7   FLWQAIDPHGQLREGELMSGKKNEVSQWLIEQGLQPCQINSGKRIS----PG-------- 54
           F W+ +D HG+ + G L +       Q L   G++  ++      +    PG        
Sbjct: 12  FRWEGLDRHGRPQRGVLQARDATAARQALRRDGVRVARLQPADTAAATPAPGISARRGRR 71

Query: 55  QWRGEPLIQFTRQLATLLQAGLPLVSGLQLLAAEHPSAAWRCLLREVSEQVRQGQPFSEV 114
           +   + ++ FTRQLAT+LQAGLPL+  L +      + A   LL  + + V +G      
Sbjct: 72  RITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVARGDSLHAA 131

Query: 115 IAEQHAVFPLIYRQLIAIGELTGHLDECCLQLAQQQEAQQKLQKKVIKALRYPLFICAVA 174
           +A     F  ++ QL+   E  G LD    ++A  +E    L+ KV  AL YP  +  VA
Sbjct: 132 LARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAALAYPCAVVLVA 191

Query: 175 LLVSILMLVMVLPEFAGVYQSFNAPLPWFTQGLLNLSTLLIDSGPWLA---AILVCMAYT 231
           + V++++++ V+P F  +++ F A LP  T+ +++L+  L  + PWL    AI V     
Sbjct: 192 VAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALTQAWPWLLPGLAIAVLAGLQ 251

Query: 232 YLRRLHPQPQWRRREQAALLRLPLIAHLIKGGCLSQIFRILAMTQQAGLSLVDGLAAAAL 291
             RR  P  Q  +R     LRLPL+  L++   L++  R       AG++LV  L   A 
Sbjct: 252 AWRRWLPLGQHAQRLS---LRLPLLGGLLRQAALARWSRTFGTLLGAGIALVQALETVAG 308

Query: 292 SVDNLFYRQAIDNIRQQISQGQTFHRALEQQALFPTLCQQLVRVGEESGSLDTLLGKLAA 351
           +  N+   QA   +R  +  G + H A++   +FP L  Q+  VGEE+G+LD +L K+A 
Sbjct: 309 AAGNVVIGQASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTAVGEETGTLDAMLIKIAE 368

Query: 352 WHEQQTFELADTLAQTLEPLLMLVVGGIVGTLVIAMYLPIFQLGNVL 398
            +E++  +    L   +EP +M V+G ++G LVIA+YLP+F++G+V+
Sbjct: 369 LNEREVDDTVTALTSLMEPAIMTVLGLVIGGLVIALYLPVFRMGSVV 415