Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Serratia liquefaciens MT49

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score =  389 bits (1000), Expect = e-113
 Identities = 224/449 (49%), Positives = 298/449 (66%), Gaps = 5/449 (1%)

Query: 1   MIPVSLQALADVLSAELIGADCQIVEVTTDTRQVTAGCLFVALKGERFDAHDFAVDAVAA 60
           MIP+ L  LA VL+A+ IG D  + +V++D+R V A  LFVALKGERFDAHDFA  AV  
Sbjct: 1   MIPLKLSELAKVLNAKHIGDDLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMD 60

Query: 61  GAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRKQVPARVVALTGSSGKTSVKEMAAA 120
           GA ALLV + L +  PQL+V +++ A+GQ+ A V++ V  + VALTGS+GKTSVKEM A 
Sbjct: 61  GASALLVERELPIAAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVAT 120

Query: 121 ILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTCPQTAL 180
           IL    +VLYTAGNFNN++GVPLTLLRL+PQH++ V ELGANH+GEI YT++L  P  A+
Sbjct: 121 ILSTQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAM 180

Query: 181 VNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQNMLEGKTVWRFS 240
           VNN+A+AHLEGFGSL GVA+AK EIF  L  DGVA+INAD+      +      T   FS
Sbjct: 181 VNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMRRAAASHTQLSFS 240

Query: 241 PQAAEGVDFFASDVQVNGEGT-QFTLHSPFGTAPIALPLPGRHNVANALAATALAMSAGA 299
            Q     D  A ++  +  G  +F +        ++LPL GRH V+NALAAT++ ++ G 
Sbjct: 241 SQ-GNPADVSADELSADALGCYRFRIAYLDEQRTVSLPLSGRHQVSNALAATSICLALGL 299

Query: 300 SLEAVRQGLKQLQAVPGRLFPIALSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVV 359
           SL+ + QGL +LQ V GR+ P  L    LL+DD+YNAN  S+ AA   L E+ G R +V+
Sbjct: 300 SLDEIVQGLMRLQPVKGRMQPTRLGR-FLLIDDTYNANPASVGAAIDWLQEIEGNRCLVL 358

Query: 360 GDMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQTLIAAAGNGEHFQDKAAVTARVA 419
           GD+ ELG  A   HRQ+GE A+  G+D +  +G LS+   + A  G+HF D  A+   + 
Sbjct: 359 GDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRA-SSEAFAGKHFTDLDALVVDLV 417

Query: 420 ELLSE-HAVITVLIKGSRSAAMEQVVRAL 447
              ++    +TVL+KGSRSA ME+VV AL
Sbjct: 418 SYFNQLTGKVTVLVKGSRSARMERVVEAL 446