Pairwise Alignments

Query, 1137 a.a., DEAD/DEAH box helicase family protein from Serratia liquefaciens MT49

Subject, 901 a.a., Type I restriction enzyme EcoKI R protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  123 bits (308), Expect = 7e-32
 Identities = 160/623 (25%), Positives = 257/623 (41%), Gaps = 86/623 (13%)

Query: 207 ETRRRLIDSRLLAAGWDVGD----ELKNTDHVTQEHPVKEQPTSTGDGYADYVLWDEAHK 262
           E  R  ID     AGW V +    E   T    +E  +K      G+  ADY L+    K
Sbjct: 5   EKARIKIDQWFADAGWKVVNREDYEPTGTAVAIREGLLK------GNLEADYFLFING-K 57

Query: 263 PLAVVEAKK------ASVSAEQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDNKT 316
            + V+EAK+      AS   EQ  + AR   +  +      P IF +NG +++  D  + 
Sbjct: 58  AVGVLEAKREETDVFASKVCEQAALYARSVPNIYQAYQKPLPFIFTSNGKELYFCDFREQ 117

Query: 317 HGYPPRRIFGFYGKESLQYL-IQQRETRLPLNSIPHVKDNEGKAVAGRLYQLETIARVSE 375
                + I      E ++ L I+     LP      ++D           Q E +  + +
Sbjct: 118 DSCFKQIITIPTPHELVKKLGIEDTFAGLPTLKRKGLRD----------CQYEAVTELEK 167

Query: 376 RFTNKYRQSLIVQATGTGKTRVAIALSKLMIDARWVKRILFLCDRRELRKQAANAFNQF- 434
            F     ++L+V ATG GKT  A   +  M+    ++R+LFL DR  L KQA   F  F 
Sbjct: 168 SFRAGQNRALMVLATGAGKTYTACLAAYRMLSYTPMRRVLFLVDRNNLGKQAEGEFGTFR 227

Query: 435 ------TNEPLYVVGKSKKED-RQNARIYIATYPGMMKIMD------------------- 468
                     ++ V + +      ++ + I+T   +   +                    
Sbjct: 228 LTENGDAFNTIFTVNRLRSPSIPSDSNVVISTIQRLFSFLKGEAIEDNDDDDENEPAEEV 287

Query: 469 ------HFDVGYFDLIIADESHRSIYNVYGDVFKYFD-ALQIGLTATPIDMVSKTTFGLF 521
                 +    YFD+II DE HRSIY  +  V +YFD A  +GLTATPI      T   F
Sbjct: 288 TLPPNPNLPHDYFDMIIIDECHRSIYGNWRMVLEYFDTARLVGLTATPI----PETMAFF 343

Query: 522 GCEGRIPTANYSLEDAIADNNLVP---YEVVTHTTEFLREGIKREKLSDQQIRELEDQGV 578
               RI   NY+LE +I D   V    Y + T  TE     ++ EK  ++     E + V
Sbjct: 344 N-NNRI--VNYTLEKSIVDGVNVDCRVYRIKTQVTETGGAILEGEKFKEETRYTGEVKTV 400

Query: 579 -DPNTLEFEGKSLDEAIYNNDTNRHIL---RNLMENGLKDADGQLPG-----KTIIFARN 629
               T  +  K L+ ++ N    + IL   R+++   L +   + P      KT+IFA N
Sbjct: 401 SSKETKNYTNKELNRSVINPAQIKLILSTYRDVVYTELFNDPQRKPNMDYLPKTLIFALN 460

Query: 630 HKHALLLNKLFDEMYPQFAGHFCQVIDNYDPRAEQLIDDFKGLDESTNKELTLAISVDML 689
             HA  + ++  E++ +    F Q I      + +LI  F+      +K+  +A++  ++
Sbjct: 461 EAHATNIVQIAKEVFGRNDDRFVQKITYSAGDSNELIRQFR-----NDKDFRIAVTCTLV 515

Query: 690 DTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGNDENGNSLDKQKFRIFDHWG 749
            TG DV  +  ++F + V+S   + QM GRG R        +   N+  K  F + D  G
Sbjct: 516 ATGTDVKPLEVVMFMRDVESLPLYIQMKGRGVRTIGDDQLRNVTPNAFSKDCFYLVDAVG 575

Query: 750 NFEYHELHTEEAEVKPTKSLAQK 772
             E+ +      +   TK++  K
Sbjct: 576 VTEHAQTVAPIDDGPTTKTITLK 598