Pairwise Alignments

Query, 352 a.a., permease from Serratia liquefaciens MT49

Subject, 474 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 6e-15
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 61  DSSPWLAAWHYALVYFTAVWKAAVLGVVLGSLVQVLIPRDWLMRTLGHPRFSGTLLGAVI 120
           DS+PWL                 +LG+VL  ++++ +P  W+ + LG      T+  AV+
Sbjct: 12  DSAPWL-----------------LLGLVLAGMLKMFVPMTWMQKQLGGHGVKTTIKAAVL 54

Query: 121 ALPGMMCTCCAAPVAAGLRRQSVSSGAAMAFWLSNPVLNPATLIFMGFVLGWQFAAIRLV 180
             P  +C+C   P A GLRR   S  A  +F +S P     ++     +LG   A +R +
Sbjct: 55  GAPLPLCSCGVIPAAVGLRRSGASKAATTSFLVSTPETGIDSVSVSYVLLGPFMAVVRPI 114

Query: 181 AGVIMVLGIAWLVQR 195
           A V   +    LV R
Sbjct: 115 AAVTSAIVAGLLVGR 129



 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 70  HYA---LVYFTAVWKAAVLGVVLGSLVQVLIPRDWLMRTLGHPRFSGTLLGAVIALPGMM 126
           HYA   LV  T VW   ++G+   +LVQ  +P D++ +          L+  +I++P  +
Sbjct: 295 HYAATDLVRDTTVW--LLIGLFFAALVQTYVPGDFMAKW--GDGILAMLVMVLISVPMYI 350

Query: 127 CTCCAAPVAAGLRRQSVSSGAAMAFWLSNPVLNPATLIFMGFVLGWQ--FAAIRLVAGVI 184
           C   + P+AAGL    VS GA + F L+ P  N ATL  +   LG +  +  +  V GV 
Sbjct: 351 CATASTPIAAGLLLAGVSPGAVLVFMLAGPATNIATLGVVTKELGKRALYGYLGGVLGVA 410

Query: 185 MVLGI 189
           +V G+
Sbjct: 411 LVAGV 415



 Score = 38.1 bits (87), Expect = 5e-07
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 234 WSTIPVYILAVLALGAARVWLFPHADGAIDNSVLWIIGLAIAGCLFVIPTAAEIPIVQTL 293
           W  I ++  A++       ++    DG +   V+ +I + +  C       A  PI   L
Sbjct: 308 WLLIGLFFAALVQTYVPGDFMAKWGDGILAMLVMVLISVPMYIC-----ATASTPIAAGL 362

Query: 294 MLAGMGTGPALALLMTLPAVSLPSLLMLNKAFSAKALCLTALLVALCGIVTGVVGMGLV 352
           +LAG+  G  L  ++  PA ++ +L ++ K    +         AL G + GV+G+ LV
Sbjct: 363 LLAGVSPGAVLVFMLAGPATNIATLGVVTKELGKR---------ALYGYLGGVLGVALV 412