Pairwise Alignments

Query, 314 a.a., tRNA pseudouridine(55) synthase TruB from Serratia liquefaciens MT49

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas stutzeri RCH2

 Score =  315 bits (806), Expect = 1e-90
 Identities = 160/309 (51%), Positives = 217/309 (70%), Gaps = 7/309 (2%)

Query: 1   MSRPRRRGRDIHGVLLLDKPQGLSSNDALQKVKRLYNANRAGHTGALDPLATGMLPICLG 60
           M++ +R  R+++G++LLDKP+G +SN ALQKV+ L NA +AGHTG+LDPLATG+LP+C G
Sbjct: 1   MAQVKRVRRNVNGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG 60

Query: 61  EATKFSQFLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVNFTQAQLDAALDSFRGDIK 120
           EATKFSQ+LLD+DK Y  + +LG  T T+DA+G++++ +PV  T  QL+A L  FRGDI 
Sbjct: 61  EATKFSQYLLDADKAYETVMQLGVTTTTADAEGEVLERKPVAVTVEQLEALLPQFRGDIL 120

Query: 121 QVPSMYSALKYQGKKLYEYARQGIEVPREARSITVYDLQFIRWEGDELELEIHCSKGTYI 180
           QVP MYSALK  G+ LY+ AR G  V RE RS+ +  L+ +  EGD+  L + CSKGTYI
Sbjct: 121 QVPPMYSALKRDGQPLYKLARAGEVVEREPRSVNIARLELLSLEGDKARLAVSCSKGTYI 180

Query: 181 RTITDDLGELLGCGAHVIYLRRLQVATYPIERMVTLEQLNELLEQAQAQEVAPGELLDPL 240
           RT+ +DLG LLGCGAHV  LRR Q   + + + VTLE L +L  +  A      E LD L
Sbjct: 181 RTLVEDLGHLLGCGAHVAELRRTQAGPFDLSQTVTLETLEQLHSEGGA------EALDAL 234

Query: 241 LMPMDSPVENYPEVNLLPVVAGYVKQGQPVQVAGAPASGMVRITEGEERKFIGVGDIADD 300
           L P+DS +E++P + L    A Y   GQPV+   AP  GMVR+ +   R FIG+G++++D
Sbjct: 235 LQPVDSGLEHWPLLQLSEHSAYYWLHGQPVRAPEAPKYGMVRVQDNNGR-FIGIGEVSED 293

Query: 301 GRVAPRRLV 309
           GR+APRRL+
Sbjct: 294 GRIAPRRLI 302