Pairwise Alignments

Query, 314 a.a., tRNA pseudouridine(55) synthase TruB from Serratia liquefaciens MT49

Subject, 308 a.a., tRNA pseudouridine synthase B (NCBI) from Rhodospirillum rubrum S1H

 Score =  172 bits (437), Expect = 7e-48
 Identities = 106/317 (33%), Positives = 169/317 (53%), Gaps = 19/317 (5%)

Query: 1   MSRPRRRGRDIHGVLLLDKPQGLSSNDALQKVKRLYNANRAGHTGALDPLATGMLPICLG 60
           MSR RRRG+ IHG L +DKP G++S D + +++R  +A + GH G LDPLA+G+LPI  G
Sbjct: 1   MSR-RRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59

Query: 61  EATKFSQFLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVNFTQAQLDAALDSFRGDIK 120
           EATK   +++D  K Y ++   G+  DT D +G+++    V      + A L  F G+I+
Sbjct: 60  EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119

Query: 121 QVPSMYSALKYQGKKLYEYARQGIEVPREARSITVYDLQFIRWEGDEL-ELEIHCSKGTY 179
           QVP +YSA+K +G++ Y+ AR    V  ++R I + DL  +     +     I   KG Y
Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179

Query: 180 IRTITDDLGELLGCGAHVIYLRRLQVATYPIERMVTLEQLNELLEQAQAQEVAPGELLDP 239
           +R++  DL   LG   HV+ LRRL    +  E  ++L+ ++ L   A   E         
Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHSE--------- 230

Query: 240 LLMPMDSPVENYPEVNLLPVVAGYVKQGQPVQVAG-APASGMVRITEGE------ERKFI 292
            L+P+++ + + P V L    A  + QGQPV +   A  + +  + +GE        K +
Sbjct: 231 SLLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALLNGKLV 290

Query: 293 GVGDIADDGRVAPRRLV 309
            +  I  +G + P R+V
Sbjct: 291 ALAKIV-EGEIRPLRVV 306