Pairwise Alignments

Query, 314 a.a., tRNA pseudouridine(55) synthase TruB from Serratia liquefaciens MT49

Subject, 301 a.a., tRNA pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score =  188 bits (478), Expect = 1e-52
 Identities = 104/269 (38%), Positives = 155/269 (57%), Gaps = 10/269 (3%)

Query: 5   RRRGRDIHGVLLLDKPQGLSSNDALQKVKRLYNANRAGHTGALDPLATGMLPICLGEATK 64
           +R+GRDI G L++DKP GL+S   + KV+  ++A +AGH G LDP ATG+L + LGEATK
Sbjct: 4   KRKGRDISGWLVVDKPAGLTSTAVVNKVRWAFDAKKAGHAGTLDPEATGVLAVALGEATK 63

Query: 65  FSQFLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVNFTQAQLDAALDSFRGDIKQVPS 124
              ++ D+ K Y    RLGQ T+T DA+G+++       +  ++ AAL  F GDI QVP 
Sbjct: 64  TVPYITDALKAYTFTVRLGQATNTDDAEGEVIARSETRPSDDEIVAALPQFLGDIMQVPP 123

Query: 125 MYSALKYQGKKLYEYARQGIEVPREARSITVYDLQFI-RWEGDELELEIHCSKGTYIRTI 183
            +SA+K  G++ Y+ AR G E+   AR + V +L  + R + D + LE+ C KG Y+R+I
Sbjct: 124 KFSAVKIDGQRAYKLARDGEEIELAARPLWVEELILVDRPDDDHVVLEMTCGKGGYVRSI 183

Query: 184 TDDLGELLGCGAHVIYLRRLQVATYPIERMVTLEQLNELLEQAQAQEVAPGELLDPLLMP 243
             DLG  LGC  HV  LRR     +  E  ++LE L+E+ +            LD  L P
Sbjct: 184 ARDLGAALGCHGHVKCLRRTWSGPFDAEDGISLETLDEMAKSPD---------LDGYLRP 234

Query: 244 MDSPVENYPEVNLLPVVAGYVKQGQPVQV 272
           ++  + + P++   P  A  ++ G P  V
Sbjct: 235 LEEGLADLPQLTCTPEGAAKLRNGNPGMV 263