Pairwise Alignments

Query, 314 a.a., tRNA pseudouridine(55) synthase TruB from Serratia liquefaciens MT49

Subject, 240 a.a., tRNA pseudouridine synthase B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  118 bits (296), Expect = 1e-31
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 15/229 (6%)

Query: 14  VLLLDKPQGLSSNDALQKVKRLYNANR--------AGHTGALDPLATGMLPICLGEATKF 65
           VL  +KP G +S   +  V+  Y+  R         GH G LDPLATG++ +C G+ATK 
Sbjct: 8   VLFFNKPLGWTSFKVVGHVR--YHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65

Query: 66  SQFLLDSDKRYRVIARLGQRTDTSDADGQIVQERPV-NFTQAQLDAALDSFRGDIKQVPS 124
            +      K Y    RLG  T + D + +I    P  + T+  ++  L  F G I+QVP 
Sbjct: 66  IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPP 125

Query: 125 MYSALKYQGKKLYEYARQGIEVPREARSITVYDLQFIRWEGDE----LELEIHCSKGTYI 180
            +SA    GK+ YE AR+G EV  +A+ + + +++ +    D+    + + + CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSKGTYI 185

Query: 181 RTITDDLGELLGCGAHVIYLRRLQVATYPIERMVTLEQLNELLEQAQAQ 229
           R +  D+GE L  GAH+  L R +V    +E  +  E   E +++ + +
Sbjct: 186 RALARDIGEALQSGAHLTELIRTRVGDVRLEDCLDPEHFKEWIDRQEIE 234