Pairwise Alignments

Query, 502 a.a., transcription termination/antitermination protein NusA from Serratia liquefaciens MT49

Subject, 543 a.a., NusA antitermination factor from Sphingomonas koreensis DSMZ 15582

 Score =  387 bits (993), Expect = e-112
 Identities = 221/524 (42%), Positives = 314/524 (59%), Gaps = 36/524 (6%)

Query: 4   EILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWV 63
           E++A+  +V++EK + +  + EA+E A+  A K +Y  E ++R  +D +TGD   +R   
Sbjct: 11  ELIAIANSVASEKMIDKSIVIEAMEEAIERAAKNRYGVENDIRAKLDPQTGDLRLWRVVE 70

Query: 64  AVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
            V+ V    +++ L+ AQ  +   ++G +I D +  + F RI  Q +KQ+I QKVR+AER
Sbjct: 71  VVEAVDDYFKQVDLKGAQKLQKDAKVGDFIVDPLPPIEFGRIQAQASKQIIFQKVRDAER 130

Query: 124 AMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRGIL 183
               + F+  +GEI+TGVVK+V    + +DLG  AE VI R+  +PRE  R GDR+R ++
Sbjct: 131 ERQFEEFKDRQGEIITGVVKRVEFGHVVVDLG-RAEGVIRRDAQIPREVVRVGDRVRSLI 189

Query: 184 YAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243
             V  E RG Q+F+SR+  + +K+LF  EVPEI + +IEIKAAARDPGSRAKI V ++D 
Sbjct: 190 LKVVRETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGVISHDS 249

Query: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDEDNC 303
            IDPVGACVGM+G+RVQAV  E+ GE+IDII W  + A FV+NA+ PA+VA +V+DE++ 
Sbjct: 250 SIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVARVVIDEEDD 309

Query: 304 TMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHAAI 363
            +++ V    L+ AIGR GQNVRLASQL  +        ++++T  D   K QAE  A  
Sbjct: 310 RIEVVVPDDQLSLAIGRRGQNVRLASQLTGK-------AIDILTETDSSEKRQAEFVANS 362

Query: 364 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTT 423
           + F   LD+DE  A +LV EGFS LEE+AYV + EL  I+G DED+ + L+ RA  AL  
Sbjct: 363 EMFQNELDVDETLAQLLVAEGFSQLEEVAYVELDELAGIEGFDEDLAQELQSRAAEALER 422

Query: 424 LALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE----- 478
              A   +  +    DDL  +P L  +M   L   G+ TL+DLA+   D+L   +     
Sbjct: 423 REEANRTARRELGVEDDLATMPYLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRPEPR 482

Query: 479 ----------------------GLSDEQAGELIMAARNICWFGD 500
                                 GLSDEQ  E+IMAAR   WF D
Sbjct: 483 RRGDGPAAPVRESDKGGVLGEYGLSDEQGNEIIMAAR-AHWFAD 525