Pairwise Alignments

Query, 502 a.a., transcription termination/antitermination protein NusA from Serratia liquefaciens MT49

Subject, 491 a.a., transcription termination factor NusA from Cupriavidus basilensis FW507-4G11

 Score =  461 bits (1187), Expect = e-134
 Identities = 237/501 (47%), Positives = 355/501 (70%), Gaps = 14/501 (2%)

Query: 1   MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFR 60
           M++E+L +V+A++ EK++ ++ +F ALE ALA+ATKK++E+++++RV+IDR++G+ +TFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFR 60

Query: 61  RWVAVDE---VTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQK 117
           RW+ V +   + +P ++I +  A+ ++P I+L  ++E+QIESV F RI  Q AKQVI+QK
Sbjct: 61  RWLVVPDEQGLQEPDKQILMFEAREQDPDIQLDEFVEEQIESVEFGRIGAQAAKQVILQK 120

Query: 118 VREAERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGD 177
           +R+AER  +++ +     +++TG VK+ ++  + ++ G   EA++ R+ ++P+EN R GD
Sbjct: 121 IRDAEREQILNDYLDRGEKVMTGTVKRADKKGLIVESG-RVEALLARDQIIPKENLRTGD 179

Query: 178 RIRGILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237
           R+R  +  V   ARG Q+ +SR++ E L +LF  EVPE+ + ++EIKAAARDPG RAKIA
Sbjct: 180 RVRAYILNVDRTARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIV 297
           V  +DKRIDP+G CVG+RG RV AV +E+GGE +DI+LW ++PAQFVI A+APA V SIV
Sbjct: 240 VVAHDKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIV 299

Query: 298 VDEDNCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQA 357
           VDE+  +MD+ V+  NLA AIGR+GQNVRLAS+L         W++N+MT ++   K   
Sbjct: 300 VDEEKHSMDVVVDEENLAVAIGRSGQNVRLASEL-------TGWQINIMTQEESAQKQAE 352

Query: 358 EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRA 417
           E+      F   LD+DE+ A +L++EGFSTLEE+AYVPI E+LEID  DED V  LR+RA
Sbjct: 353 ESDVVRKLFMAKLDVDEEVADILIDEGFSTLEEVAYVPISEMLEIDAFDEDTVNELRNRA 412

Query: 418 KAALTTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADI 477
           + AL T+ LA+EE +  ++ + DL +L GL   +  KLA   + T ++LAE  VD+L D+
Sbjct: 413 RDALLTMELAREEKV--EEVSQDLRSLDGLTPELIGKLAEGNIHTRDELAELAVDELVDM 470

Query: 478 EGLSDEQAGELIMAARNICWF 498
            GL ++ A  LIM AR   WF
Sbjct: 471 VGLGEDDARALIMKARE-HWF 490