Pairwise Alignments

Query, 502 a.a., transcription termination/antitermination protein NusA from Serratia liquefaciens MT49

Subject, 491 a.a., transcription termination factor NusA from Ralstonia sp. UNC404CL21Col

 Score =  458 bits (1179), Expect = e-133
 Identities = 235/501 (46%), Positives = 353/501 (70%), Gaps = 14/501 (2%)

Query: 1   MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFR 60
           M++E+L +V+A++ EK++ ++ +F ALE ALA+ATKK++E++++VRV+IDR++G+ +TFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFR 60

Query: 61  RWVAVDE---VTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQK 117
           RW+ V +   + +P ++I L  A+ + P +++  ++E+QIESV F RI  Q AKQVI+Q+
Sbjct: 61  RWLVVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQR 120

Query: 118 VREAERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGD 177
           +R+AER  +++ +     +++TG +K+ ++  + ++ G   EA++ R+ M+P+EN R GD
Sbjct: 121 IRDAEREQILNDYLDRGEKVMTGTIKRADKKGLIVETG-RVEALLARDQMIPKENLRTGD 179

Query: 178 RIRGILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237
           R+R  +  V   ARG Q+ +SR+  E L +LF  EVPE+ + ++EIKAAARDPG RAKIA
Sbjct: 180 RVRAYILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIV 297
           V  +DKRIDP+G CVG+RG RV AV +E+GGE +DI+LW ++PAQFVI A+APA V SIV
Sbjct: 240 VVAHDKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIV 299

Query: 298 VDEDNCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQA 357
           VDE+  +MD+ V+  NLA AIGR+GQNVRLAS+L         W++N+MT  +   K   
Sbjct: 300 VDEEKHSMDVVVDEENLAVAIGRSGQNVRLASEL-------TGWQINIMTPAESAQKQAE 352

Query: 358 EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRA 417
           E+      F   LD+DE+ A +L+EEGFS+LEE+AYVP++E+LEI+  DED V  LR+RA
Sbjct: 353 ESSVVRQLFMAKLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRA 412

Query: 418 KAALTTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADI 477
           +  L T+ LA+EE +  +K + DL +L GL   +  KLA   + T +DLAE  VD+L ++
Sbjct: 413 RDVLLTMELAKEEKV--EKVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEM 470

Query: 478 EGLSDEQAGELIMAARNICWF 498
            G+ +EQA  LIM AR   WF
Sbjct: 471 TGVDEEQAKALIMKARE-HWF 490