Pairwise Alignments

Query, 477 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Serratia liquefaciens MT49

Subject, 495 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 117/423 (27%), Positives = 165/423 (39%), Gaps = 56/423 (13%)

Query: 60  PASTQKVLTALAALLQLGPDYRFTTTLESQGDISDGVLRGNLIARFGGDPTFKRQSLRNM 119
           PAS  K  TAL  L  LGP++R+TT L + G I  G L G+LI    GDP+    +L  +
Sbjct: 82  PASVAKAATALYGLRVLGPEHRYTTRLLATGPIRAGRLDGDLILAGSGDPSLDTAALAGL 141

Query: 120 VAILKKQGVRQITGDVLVDTSVFAS-HDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSL 178
              L+  GV ++ G + V  S         PG P           PA A ++ N   V  
Sbjct: 142 ADRLRAAGVSEVAGALRVQGSALPEIRSIDPGQP-----DHLGYSPAIAGLNLNFNRVYF 196

Query: 179 YSAPNPGDMAF---IRVASYYP----VNMFSQVRTL------AKGSADAQYCELDVVPGE 225
                  D A     R  +  P     +M  Q R L       +G+AD      D +  E
Sbjct: 197 EWKRQGSDYAITMDARTGALRPQVRVSSMSVQPRNLPIYTYEQRGAADHWTVARDALGAE 256

Query: 226 LNRFTLTGCLTQRSDPLPLAFAIQDGASYAGAILKDELTQAGIQIDGHLKRQTQPGLKGT 285
             R+            LP    +++ A+YA  + +      GI++         P    T
Sbjct: 257 GGRW------------LP----VRNPAAYAADVFRTLCGAQGIRVTLGPPLAVLPD-TAT 299

Query: 286 VIAQTQSAPLHELLKIMLKKSDNMIADTVFRTIGHERFGVPGTWRA-GADAVRQVLRQKA 344
           +IA   S  L  LL+ MLK S N+ A+ +  T        P + +A GA        Q  
Sbjct: 300 LIASHDSETLPGLLRGMLKYSTNVTAECIGLTASTALGARPDSLQASGAQMAAWHSAQLM 359

Query: 345 GVDLGNSIVVDGSGLSRHNLLAPATMMQALQYIAQHDSELNFISML-PLSGYDGTLRYRG 403
           G   G     D SGL   + ++   M + L   + H +      +L P    D +     
Sbjct: 360 GA--GPIRFADHSGLGDRSRISSLDMARLL---STHGTRTALTPLLKPYLPRDAS----- 409

Query: 404 GLHEAGVDGKVSAKTGALQGVYNLAGFITTASGQRFAFVQYLSGYAVPPEDQKQRRAPLV 463
           G   A    +V AKTG L  V  LAG+IT  SG+  AF  + +           RRA L 
Sbjct: 410 GARMASAPAQVVAKTGTLNFVSGLAGYITPPSGRALAFAIFSADI--------DRRAALS 461

Query: 464 RFE 466
           R E
Sbjct: 462 RAE 464